Software available in EESSI¶
682 unique software projects are currently available in EESSI (+ 2948 unique extensions)
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ALL (more details)
https://gitlab.jsc.fz-juelich.de/SLMS/loadbalancing
A Load Balancing Library (ALL) aims to provide an easy way to include dynamic domain-based load balancing into particle based simulation codes. The library is developed in the Simulation Laboratory Molecular Systems of the Jülich Supercomputing Centre at Forschungszentrum Jülich.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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ANTLR (more details)
https://www.antlr2.org
ANTLR, ANother Tool for Language Recognition, (formerly PCCTS) is a language tool that provides a framework for constructing recognizers, compilers, and translators from grammatical descriptions containing Java, C#, C++, or Python actions.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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AOCL-BLAS (more details)
https://github.com/amd/blis
AOCL-BLAS is AMD's optimized version of BLAS targeted for AMD EPYC and Ryzen CPUs.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntel
Supported GPU families: AMD NVIDIA
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AOFlagger (more details)
https://aoflagger.readthedocs.io
The AOFlagger is a tool that can find and remove radio-frequency interference (RFI) in radio astronomical observations. It can make use of Lua scripts to make flagging strategies flexible, and the tools are applicable to a wide set of telescopes.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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ASE (more details)
https://wiki.fysik.dtu.dk/ase
ASE is a python package providing an open source Atomic Simulation Environment in the Python scripting language. From version 3.20.1 we also include the ase-ext package, it contains optional reimplementations in C of functions in ASE. ASE uses it automatically when installed.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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ATK (more details)
https://developer.gnome.org/atk
ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Abseil (more details)
https://abseil.io
Abseil is an open-source collection of C++ library code designed to augment the C++ standard library. The Abseil library code is collected from Google's own C++ code base, has been extensively tested and used in production, and is the same code we depend on in our daily coding lives.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Archive-Zip (more details)
https://metacpan.org/pod/Archive::Zip
Provide an interface to ZIP archive files.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Armadillo (more details)
https://arma.sourceforge.net
Armadillo is an open-source C++ linear algebra library (matrix maths) aiming towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Arrow (more details)
https://arrow.apache.org
Apache Arrow (incl. PyArrow Python bindings), a cross-language development platform for in-memory data.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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ArviZ (more details)
https://github.com/arviz-devs/arviz
Exploratory analysis of Bayesian models with Python
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Autoconf (more details)
https://www.gnu.org/software/autoconf
Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Automake (more details)
https://www.gnu.org/software/automake/automake.html
Automake: GNU Standards-compliant Makefile generator
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Autotools (more details)
https://autotools.io
This bundle collect the standard GNU build tools: Autoconf, Automake and libtool
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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BCFtools (more details)
https://www.htslib.org
Samtools is a suite of programs for interacting with high-throughput sequencing data. BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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BLAST+ (more details)
https://blast.ncbi.nlm.nih.gov
Basic Local Alignment Search Tool, or BLAST, is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of different proteins or the nucleotides of DNA sequences.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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BLIS (more details)
https://github.com/flame/blis
BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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BWA (more details)
http://bio-bwa.sourceforge.net, https://bio-bwa.sourceforge.net
Burrows-Wheeler Aligner (BWA) is an efficient program that aligns relatively short nucleotide sequences against a long reference sequence such as the human genome.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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BamTools (more details)
https://github.com/pezmaster31/bamtools
BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Bazel (more details)
https://bazel.io
Bazel is a build tool that builds code quickly and reliably. It is used to build the majority of Google's software.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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BeautifulSoup (more details)
https://www.crummy.com/software/BeautifulSoup
Beautiful Soup is a Python library designed for quick turnaround projects like screen-scraping.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Bio-DB-HTS (more details)
https://metacpan.org/release/Bio-DB-HTS
Read files using HTSlib including BAM/CRAM, Tabix and BCF database files
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Bio-SearchIO-hmmer (more details)
https://metacpan.org/pod/Bio::SearchIO::hmmer3
Code to parse output from hmmsearch, hmmscan, phmmer and nhmmer, compatible with both version 2 and version 3 of the HMMER package from http://hmmer.org.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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BioPerl (more details)
http://www.bioperl.org, https://bioperl.org
Bioperl is the product of a community effort to produce Perl code which is useful in biology. Examples include Sequence objects, Alignment objects and database searching objects.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Biopython (more details)
https://www.biopython.org
Biopython is a set of freely available tools for biological computation written in Python by an international team of developers. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Bison (more details)
https://www.gnu.org/software/bison
Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Blosc (more details)
https://www.blosc.org
Blosc, an extremely fast, multi-threaded, meta-compressor library
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Blosc2 (more details)
https://www.blosc.org
Blosc, an extremely fast, multi-threaded, meta-compressor library
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Boost (more details)
https://www.boost.org
Boost provides free peer-reviewed portable C++ source libraries.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Boost.MPI (more details)
https://www.boost.org
Boost provides free peer-reviewed portable C++ source libraries.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Boost.Python (more details)
https://boostorg.github.io/python
Boost.Python is a C++ library which enables seamless interoperability between C++ and the Python programming language.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Boost.Python-NumPy (more details)
https://boostorg.github.io/python
Boost.Python is a C++ library which enables seamless interoperability between C++ and the Python programming language.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Bowtie2 (more details)
https://bowtie-bio.sourceforge.net/bowtie2/index.shtml
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Brotli (more details)
https://github.com/google/brotli
Brotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression. The specification of the Brotli Compressed Data Format is defined in RFC 7932.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Brunsli (more details)
https://github.com/google/brunsli
Brunsli is a lossless JPEG repacking library.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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CD-HIT (more details)
http://weizhongli-lab.org/cd-hit
CD-HIT is a very widely used program for clustering and comparing protein or nucleotide sequences.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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CDO (more details)
https://code.zmaw.de/projects/cdo
CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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CFITSIO (more details)
http://heasarc.gsfc.nasa.gov/fitsio, https://heasarc.gsfc.nasa.gov/fitsio
CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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CGAL (more details)
https://www.cgal.org
The goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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CMake (more details)
https://www.cmake.org
CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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CP2K (more details)
https://www.cp2k.org
CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and classical pair and many-body potentials.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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CUnit (more details)
https://sourceforge.net/projects/cunit
Automated testing framework for C.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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CapnProto (more details)
https://capnproto.org
Cap’n Proto is an insanely fast data interchange format and capability-based RPC system.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Cartopy (more details)
https://scitools.org.uk/cartopy/docs/latest
Cartopy is a Python package designed to make drawing maps for data analysis and visualisation easy.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Cassiopeia (more details)
https://github.com/YosefLab/Cassiopeia
A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Catch2 (more details)
https://github.com/catchorg/Catch2
A modern, C++-native, header-only, test framework for unit-tests, TDD and BDD - using C++11, C++14, C++17 and later
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Cbc (more details)
https://github.com/coin-or/Cbc
Cbc (Coin-or branch and cut) is an open-source mixed integer linear programming solver written in C++. It can be used as a callable library or using a stand-alone executable.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Cereal (more details)
https://uscilab.github.io/cereal
cereal is a header-only C++11 serialization library. cereal takes arbitrary data types and reversibly turns them into different representations, such as compact binary encodings, XML, or JSON. cereal was designed to be fast, light-weight, and easy to extend - it has no external dependencies and can be easily bundled with other code or used standalone.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Cgl (more details)
https://github.com/coin-or/Cgl
The COIN-OR Cut Generation Library (Cgl) is a collection of cut generators that can be used with other COIN-OR packages that make use of cuts, such as, among others, the linear solver Clp or the mixed integer linear programming solvers Cbc or BCP. Cgl uses the abstract class OsiSolverInterface (see Osi) to use or communicate with a solver. It does not directly call a solver.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Check (more details)
https://libcheck.github.io/check
Check is a unit testing framework for C. It features a simple interface for defining unit tests, putting little in the way of the developer. Tests are run in a separate address space, so both assertion failures and code errors that cause segmentation faults or other signals can be caught. Test results are reportable in the following: Subunit, TAP, XML, and a generic logging format.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Clp (more details)
https://github.com/coin-or/Clp
Clp (Coin-or linear programming) is an open-source linear programming solver. It is primarily meant to be used as a callable library, but a basic, stand-alone executable version is also available.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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CoinUtils (more details)
https://github.com/coin-or/CoinUtils
CoinUtils (Coin-OR Utilities) is an open-source collection of classes and functions that are generally useful to more than one COIN-OR project.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Critic2 (more details)
https://aoterodelaroza.github.io/critic2
Critic2 is a program for the analysis of quantum mechanical calculation results in molecules and periodic solids.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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CubeLib (more details)
https://www.scalasca.org/software/cube-4.x/download.html
Cube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube general purpose C++ library component and command-line tools.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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CubeWriter (more details)
https://www.scalasca.org/software/cube-4.x/download.html
Cube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube high-performance C writer library component.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Cython (more details)
https://cython.org
Cython is an optimising static compiler for both the Python programming language and the extended Cython programming language (based on Pyrex).
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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DB (more details)
https://www.oracle.com/technetwork/products/berkeleydb
Berkeley DB enables the development of custom data management solutions, without the overhead traditionally associated with such custom projects.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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DB_File (more details)
https://perldoc.perl.org/DB_File.html
Perl5 access to Berkeley DB version 1.x.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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DIAMOND (more details)
https://github.com/bbuchfink/diamond
Accelerated BLAST compatible local sequence aligner
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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DP3 (more details)
https://dp3.readthedocs.io
DP3: streaming processing pipeline for radio interferometric data.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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DendroPy (more details)
https://dendropy.org
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Deprecated (more details)
https://github.com/tantale/deprecated
If you need to mark a function or a method as deprecated, you can use the @deprecated decorator.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Doxygen (more details)
https://www.doxygen.org, https://www.doxygen.nl
Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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chmod g+s $EESSI_PROJECT_INSTALL) so that all members of the group have permission to read and write installations. - EESSI_SITE_INSTALL is either defined or not and cannot be used with another environment variable. A site installation is done in a defined location and any installations there are (by default) world readable. - EESSI_CVMFS_INSTALL is either defined or not and cannot be used with another environment variable. A CVMFS installation targets a defined location which will be ingested into CVMFS and is only useful for CVMFS administrators. - If none of the environment variables above are defined, an EESSI_USER_INSTALL is assumed with a value of $HOME/EESSI If both EESSI_USER_INSTALL and EESSI_PROJECT_INSTALL are defined, both sets of installations are exposed, but new installations are created as user installations. Strict installation path checking is enforced by EESSI for EESSI and site installations involving accelerators. In these cases, if you wish to create an accelerator installation you must set the environment variable EESSI_ACCELERATOR_INSTALL (and load/reload this module). AMD, Arm, Intel 2023.06, 2025.06 ">
EESSI-extend (more details)
https://eessi.io/docs
The goal of the European Environment for Scientific Software Installations (EESSI, pronounced as "easy") is to build a common stack of scientific software installations for HPC systems and beyond, including laptops, personal workstations and cloud infrastructure. This module allows you to extend EESSI using the same configuration for EasyBuild as EESSI itself uses. A number of environment variables control the behaviour of the module: - EESSI_USER_INSTALL can be set to a location to install modules for use by the user only. The location must already exist on the filesystem. - EESSI_PROJECT_INSTALL can be set to a location to install modules for use by a project. The location must already exist on the filesystem and you should ensure that the location has the correct Linux group and the SGID permission is set on that directory (
Available in EESSI versions: 2023.062025.06chmod g+s $EESSI_PROJECT_INSTALL) so that all members of the group have permission to read and write installations. - EESSI_SITE_INSTALL is either defined or not and cannot be used with another environment variable. A site installation is done in a defined location and any installations there are (by default) world readable. - EESSI_CVMFS_INSTALL is either defined or not and cannot be used with another environment variable. A CVMFS installation targets a defined location which will be ingested into CVMFS and is only useful for CVMFS administrators. - If none of the environment variables above are defined, an EESSI_USER_INSTALL is assumed with a value of $HOME/EESSI If both EESSI_USER_INSTALL and EESSI_PROJECT_INSTALL are defined, both sets of installations are exposed, but new installations are created as user installations. Strict installation path checking is enforced by EESSI for EESSI and site installations involving accelerators. In these cases, if you wish to create an accelerator installation you must set the environment variable EESSI_ACCELERATOR_INSTALL (and load/reload this module).
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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ELPA (more details)
https://elpa.mpcdf.mpg.de
Eigenvalue SoLvers for Petaflop-Applications.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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ESMF (more details)
https://www.earthsystemcog.org/projects/esmf
The Earth System Modeling Framework (ESMF) is a suite of software tools for developing high-performance, multi-component Earth science modeling applications.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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ESMPy (more details)
https://earthsystemmodeling.org/esmpy
Earth System Modeling Framework (ESMF) Python Interface
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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ESPResSo (more details)
https://espressomd.org/wordpress
A software package for performing and analyzing scientific Molecular Dynamics simulations.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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ETE (more details)
http://etetoolkit.org
A Python framework for the analysis and visualization of trees
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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EasyBuild (more details)
https://easybuilders.github.io/easybuild
EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Eigen (more details)
https://eigen.tuxfamily.org
Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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EveryBeam (more details)
https://everybeam.readthedocs.io
Library that provides the antenna response pattern for several instruments, such as LOFAR (and LOBES), SKA (OSKAR), MWA, JVLA, etc.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Extrae (more details)
https://tools.bsc.es/extrae
Extrae is the package devoted to generate Paraver trace-files for a post-mortem analysis. Extrae is a tool that uses different interposition mechanisms to inject probes into the target application so as to gather information regarding the application performance.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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FALL3D (more details)
https://gitlab.com/fall3d-suite/fall3d
FALL3D is an open-source volcanic ash dispersal model.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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FFTW (more details)
https://www.fftw.org
FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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FFTW.MPI (more details)
https://www.fftw.org
FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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FFmpeg (more details)
https://www.ffmpeg.org
A complete, cross-platform solution to record, convert and stream audio and video.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
FLAC (more details)
https://xiph.org/flac
FLAC stands for Free Lossless Audio Codec, an audio format similar to MP3, but lossless, meaning that audio is compressed in FLAC without any loss in quality.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
FLTK (more details)
https://www.fltk.org
FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
FastME (more details)
http://www.atgc-montpellier.fr/fastme
FastME: a comprehensive, accurate and fast distance-based phylogeny inference program.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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FastQC (more details)
https://www.bioinformatics.babraham.ac.uk/projects/fastqc
FastQC is a quality control application for high throughput sequence data. It reads in sequence data in a variety of formats and can either provide an interactive application to review the results of several different QC checks, or create an HTML based report which can be integrated into a pipeline.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Fiona (more details)
https://github.com/Toblerity/Fiona
Fiona is designed to be simple and dependable. It focuses on reading and writing data in standard Python IO style and relies upon familiar Python types and protocols such as files, dictionaries, mappings, and iterators instead of classes specific to OGR. Fiona can read and write real-world data using multi-layered GIS formats and zipped virtual file systems and integrates readily with other Python GIS packages such as pyproj, Rtree, and Shapely.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Flask (more details)
https://flask.palletsprojects.com, https://www.palletsprojects.com/p/flask
Flask is a lightweight WSGI web application framework. It is designed to make getting started quick and easy, with the ability to scale up to complex applications. This module includes the Flask extensions: Flask-Cors
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
FlexiBLAS (more details)
https://gitlab.mpi-magdeburg.mpg.de/software/flexiblas-release
FlexiBLAS is a wrapper library that enables the exchange of the BLAS and LAPACK implementation used by a program without recompiling or relinking it.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Flux (more details)
https://flux-framework.org
Flux is a flexible framework for resource management, built for your site. The framework consists of a suite of projects, tools, and libraries which may be used to build site-custom resource managers for High Performance Computing centers. Unlike traditional resource managers, Flux can run as a parallel job under most launchers that support MPI, including under Flux itself. This not only makes batch scripts and workflows for Flux portable to other resource managers (just launch Flux as a job), but it also means that batch jobs have all the features of a full resource manager at their disposal, as if they have an entire cluster to themselves.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Flye (more details)
https://github.com/fenderglass/Flye
Flye is a de novo assembler for long and noisy reads, such as those produced by PacBio and Oxford Nanopore Technologies.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
FragGeneScan (more details)
https://omics.informatics.indiana.edu/FragGeneScan
FragGeneScan is an application for finding (fragmented) genes in short reads.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
FreeImage (more details)
http://freeimage.sourceforge.net
FreeImage is an Open Source library project for developers who would like to support popular graphics image formats like PNG, BMP, JPEG, TIFF and others as needed by today's multimedia applications. FreeImage is easy to use, fast, multithreading safe.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
FreeXL (more details)
https://www.gaia-gis.it/fossil/freexl/index
FreeXL is an open source library to extract valid data from within an Excel (.xls) spreadsheet.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
FriBidi (more details)
https://github.com/fribidi/fribidi
The Free Implementation of the Unicode Bidirectional Algorithm.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
GATK (more details)
https://www.broadinstitute.org/gatk
The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute to analyse next-generation resequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
GCC (more details)
https://gcc.gnu.org
The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
GCCcore (more details)
https://gcc.gnu.org
The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
GDAL (more details)
https://www.gdal.org
GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
GDB (more details)
https://www.gnu.org/software/gdb/gdb.html
The GNU Project Debugger
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
GDRCopy (more details)
https://github.com/NVIDIA/gdrcopy
A low-latency GPU memory copy library based on NVIDIA GPUDirect RDMA technology.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
GEOS (more details)
https://trac.osgeo.org/geos
GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
GL2PS (more details)
https://www.geuz.org/gl2ps
GL2PS: an OpenGL to PostScript printing library
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
GLPK (more details)
https://www.gnu.org/software/glpk
The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
GLib (more details)
https://www.gtk.org
GLib is one of the base libraries of the GTK+ project
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
GMP (more details)
https://gmplib.org
GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
GOTCHA (more details)
https://gotcha.readthedocs.io/en/latest
Gotcha is a library that wraps functions. Tools can use gotcha to install hooks into other libraries, for example putting a wrapper function around libc's malloc. It is similar to LD_PRELOAD, but operates via a programmable API. This enables easy methods of accomplishing tasks like code instrumentation or wholesale replacement of mechanisms in programs without disrupting their source code.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
GObject-Introspection (more details)
https://gi.readthedocs.io/en/latest
GObject introspection is a middleware layer between C libraries (using GObject) and language bindings. The C library can be scanned at compile time and generate a metadata file, in addition to the actual native C library. Then at runtime, language bindings can read this metadata and automatically provide bindings to call into the C library.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
GRASS (more details)
https://grass.osgeo.org
The Geographic Resources Analysis Support System - used for geospatial data management and analysis, image processing, graphics and maps production, spatial modeling, and visualization
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
GROMACS (more details)
https://www.gromacs.org
GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. This is a CPU only build, containing both MPI and threadMPI binaries for both single and double precision. It also contains the gmxapi extension for the single precision MPI build.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
GSL (more details)
https://www.gnu.org/software/gsl
The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
GST-plugins-bad (more details)
https://gstreamer.freedesktop.org
GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
GST-plugins-base (more details)
https://gstreamer.freedesktop.org
GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
GStreamer (more details)
https://gstreamer.freedesktop.org
GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
GTK3 (more details)
https://developer.gnome.org/gtk3/stable
GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
GTK4 (more details)
https://docs.gtk.org/gtk4
GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
GTS (more details)
http://gts.sourceforge.net
GTS stands for the GNU Triangulated Surface Library. It is an Open Source Free Software Library intended to provide a set of useful functions to deal with 3D surfaces meshed with interconnected triangles.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Gblocks (more details)
https://www.biologiaevolutiva.org/jcastresana/Gblocks.html
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Gdk-Pixbuf (more details)
https://docs.gtk.org/gdk-pixbuf
The Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it was distributed as part of GTK+ 2 but it was split off into a separate package in preparation for the change to GTK+ 3.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
GenomeTools (more details)
http://genometools.org
A comprehensive software library for efficient processing of structured genome annotations.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Ghostscript (more details)
https://ghostscript.com
Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Ginkgo (more details)
https://github.com/ginkgo-project/ginkgo
Ginkgo is a high-performance numerical linear algebra library with a focus on the solution of sparse linear systems. It also has support for popular GPUs (NVIDIA, AMD and Intel) with their native programming models, aiming to maximize the attainable performance. It also has distributed support with MPI and can be used to run solvers and preconditioners on large scale supercomputers. With a focus on sustainable software development, it has comprehensive unit tests, usage examples and continuous integration setups to ensure robustness. It also has been integrated into many popular applications such as MFEM, OpenCARP, deal.ii, OpenFOAM etc.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
GitPython (more details)
https://gitpython.readthedocs.org
GitPython is a python library used to interact with Git repositories
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
GnuTLS (more details)
https://www.gnutls.org
GnuTLS is a secure communications library implementing the SSL, TLS and DTLS protocols and technologies around them. It provides a simple C language application programming interface (API) to access the secure communications protocols as well as APIs to parse and write X.509, PKCS #12, OpenPGP and other required structures. It is aimed to be portable and efficient with focus on security and interoperability.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Go (more details)
https://www.golang.org
Go is an open source programming language that makes it easy to build simple, reliable, and efficient software.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Graphene (more details)
https://ebassi.github.io/graphene
Graphene is a thin layer of types for graphic libraries
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
GraphicsMagick (more details)
http://www.graphicsmagick.org
GraphicsMagick is the swiss army knife of image processing.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Graphviz (more details)
https://www.graphviz.org
Graphviz is open source graph visualization software. Graph visualization is a way of representing structural information as diagrams of abstract graphs and networks. It has important applications in networking, bioinformatics, software engineering, database and web design, machine learning, and in visual interfaces for other technical domains.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Greenlet (more details)
https://github.com/python-greenlet/greenlet
The greenlet package is a spin-off of Stackless, a version of CPython that supports micro-threads called "tasklets". Tasklets run pseudo-concurrently (typically in a single or a few OS-level threads) and are synchronized with data exchanges on "channels". A "greenlet", on the other hand, is a still more primitive notion of micro-thread with no implicit scheduling; coroutines, in other words. This is useful when you want to control exactly when your code runs.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Guile (more details)
https://www.gnu.org/software/guile
Guile is a programming language, designed to help programmers create flexible applications that can be extended by users or other programmers with plug-ins, modules, or scripts.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
HDBSCAN (more details)
http://hdbscan.readthedocs.io/en/latest
The hdbscan library is a suite of tools to use unsupervised learning to find clusters, or dense regions, of a dataset. The primary algorithm is HDBSCAN* as proposed by Campello, Moulavi, and Sander. The library provides a high performance implementation of this algorithm, along with tools for analysing the resulting clustering.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
HDF (more details)
https://www.hdfgroup.org/products/hdf4, https://support.hdfgroup.org/products/hdf4
HDF (also known as HDF4) is a library and multi-object file format for storing and managing data between machines.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
HDF5 (more details)
https://portal.hdfgroup.org/display/support
HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
HMMER (more details)
http://hmmer.org
HMMER is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and other sequence alignment and database search tools based on older scoring methodology, HMMER aims to be significantly more accurate and more able to detect remote homologs because of the strength of its underlying mathematical models. In the past, this strength came at significant computational expense, but in the new HMMER3 project, HMMER is now essentially as fast as BLAST.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
HPL (more details)
https://www.netlib.org/benchmark/hpl
HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
HTSlib (more details)
https://www.htslib.org
A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
HarfBuzz (more details)
https://www.freedesktop.org/wiki/Software/HarfBuzz
HarfBuzz is an OpenType text shaping engine.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
HeFFTe (more details)
https://icl.utk.edu/fft
Highly Efficient FFT for Exascale (HeFFTe) library
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
HepMC3 (more details)
http://hepmc.web.cern.ch/hepmc
HepMC is a standard for storing Monte Carlo event data.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Highway (more details)
https://github.com/google/highway
Highway is a C++ library for SIMD (Single Instruction, Multiple Data), i.e. applying the same operation to 'lanes'.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Hypre (more details)
https://computation.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods
Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers. The problems of interest arise in the simulation codes being developed at LLNL and elsewhere to study physical phenomena in the defense, environmental, energy, and biological sciences.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
ICU (more details)
https://icu.unicode.org
ICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
IDG (more details)
https://idg.readthedocs.io
Image Domain Gridding (IDG) is a fast method for convolutional resampling (gridding/degridding) of radio astronomical data (visibilities). Direction dependent effects (DDEs) or A-tems can be applied in the gridding process. The algorithm is described in "Image Domain Gridding: a fast method for convolutional resampling of visibilities", Van der Tol (2018). The implementation is described in "Radio-astronomical imaging on graphics processors", Veenboer (2020). Please cite these papers in publications using IDG.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
IPython (more details)
https://ipython.org/index.html
IPython provides a rich architecture for interactive computing with: Powerful interactive shells (terminal and Qt-based). A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. Support for interactive data visualization and use of GUI toolkits. Flexible, embeddable interpreters to load into your own projects. Easy to use, high performance tools for parallel computing.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
IQ-TREE (more details)
http://www.iqtree.org
Efficient phylogenomic software by maximum likelihood
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
ISA-L (more details)
https://github.com/intel/isa-l
Intelligent Storage Acceleration Library
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
ISL (more details)
https://libisl.sourceforge.io
isl is a library for manipulating sets and relations of integer points bounded by linear constraints.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
ITSTool (more details)
http://itstool.org
ITS Tool allows you to translate your XML documents with PO files
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
ImageMagick (more details)
https://www.imagemagick.org
ImageMagick is a software suite to create, edit, compose, or convert bitmap images
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Imath (more details)
https://imath.readthedocs.io/en/latest
Imath is a C++ and python library of 2D and 3D vector, matrix, and math operations for computer graphics
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Imlib2 (more details)
https://docs.enlightenment.org/api/imlib2/html
This is the Imlib 2 library - a library that does image file loading and saving as well as rendering, manipulation, arbitrary polygon support, etc. It does ALL of these operations FAST. Imlib2 also tries to be highly intelligent about doing them, so writing naive programs can be done easily, without sacrificing speed.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Jansson (more details)
https://www.digip.org/jansson
Jansson is a C library for encoding, decoding and manipulating JSON data. Its main features and design principles are: * Simple and intuitive API and data model * Comprehensive documentation * No dependencies on other libraries * Full Unicode support (UTF-8) * Extensive test suite
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
JasPer (more details)
https://www.ece.uvic.ca/~frodo/jasper
The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Java (more details)
http://openjdk.java.net, https://openjdk.org
Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
JsonCpp (more details)
https://open-source-parsers.github.io/jsoncpp-docs/doxygen/index.html
JsonCpp is a C++ library that allows manipulating JSON values, including serialization and deserialization to and from strings. It can also preserve existing comment in unserialization/serialization steps, making it a convenient format to store user input files.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Judy (more details)
http://judy.sourceforge.net
A C library that implements a dynamic array.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
JupyterLab (more details)
https://jupyter.org
JupyterLab is the next-generation user interface for Project Jupyter offering all the familiar building blocks of the classic Jupyter Notebook (notebook, terminal, text editor, file browser, rich outputs, etc.) in a flexible and powerful user interface. JupyterLab will eventually replace the classic Jupyter Notebook.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
JupyterNotebook (more details)
https://jupyter.org
The Jupyter Notebook is the original web application for creating and sharing computational documents. It offers a simple, streamlined, document-centric experience.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
KaHIP (more details)
https://kahip.github.io
The graph partitioning framework KaHIP -- Karlsruhe High Quality Partitioning.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
KronaTools (more details)
https://github.com/marbl/Krona/wiki/KronaTools
Krona Tools is a set of scripts to create Krona charts from several Bioinformatics tools as well as from text and XML files.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
LAME (more details)
http://lame.sourceforge.net
LAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
LAMMPS (more details)
https://www.lammps.org
LAMMPS is a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. LAMMPS has potentials for solid-state materials (metals, semiconductors) and soft matter (biomolecules, polymers) and coarse-grained or mesoscopic systems. It can be used to model atoms or, more generically, as a parallel particle simulator at the atomic, meso, or continuum scale. LAMMPS runs on single processors or in parallel using message-passing techniques and a spatial-decomposition of the simulation domain. The code is designed to be easy to modify or extend with new functionality.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
LERC (more details)
https://github.com/Esri/lerc
LERC is an open-source image or raster format which supports rapid encoding and decoding for any pixel type (not just RGB or Byte). Users set the maximum compression error per pixel while encoding, so the precision of the original input image is preserved (within user defined error bounds).
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
LHAPDF (more details)
http://lhapdf.hepforge.org
Les Houches Parton Density Function LHAPDF is the standard tool for evaluating parton distribution functions (PDFs) in high-energy physics.
Available in EESSI versions:
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
LINC (more details)
https://linc.readthedocs.io/en/latest
LINC is a pipeline to correct for various instrumental and ionospheric effects in both LOFAR HBA and LOFAR LBA observations.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
LLVM (more details)
https://llvm.org
The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
LMDB (more details)
https://symas.com/lmdb
LMDB is a fast, memory-efficient database. With memory-mapped files, it has the read performance of a pure in-memory database while retaining the persistence of standard disk-based databases.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
LPC3D (more details)
https://github.com/multixscale/LPC3D
A code to do mesoscopic simulations of ions diffusing in carbon particles and of full supercapacitors.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
LRBinner (more details)
https://github.com/anuradhawick/LRBinner
LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
LSD2 (more details)
https://github.com/tothuhien/lsd2
Least-squares methods to estimate rates and dates from phylogenies
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
LSMTool (more details)
https://lsmtool.readthedocs.io/en/latest
LSMTool is a Python package which allows for the manipulation of LOFAR sky models in the makesourcedb format.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
LZO (more details)
https://www.oberhumer.com/opensource/lzo
Portable lossless data compression library
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
LibSoup (more details)
https://wiki.gnome.org/Projects/libsoup
libsoup is an HTTP client/server library for GNOME. It uses GObjects and the glib main loop, to integrate well with GNOME applications, and also has a synchronous API, for use in threaded applications.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
LibTIFF (more details)
https://libtiff.gitlab.io/libtiff
tiff: Library and tools for reading and writing TIFF data files
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Libint (more details)
https://github.com/evaleev/libint
Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
LightGBM (more details)
https://lightgbm.readthedocs.io
A fast, distributed, high performance gradient boosting (GBT, GBDT, GBRT, GBM or MART) framework based on decision tree algorithms, used for ranking, classification and many other machine learning tasks.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
LittleCMS (more details)
https://www.littlecms.com
Little CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
LoSoTo (more details)
https://revoltek.github.io/losoto
LoSoTo: LOFAR solutions tool
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
LofarStMan (more details)
https://github.com/lofar-astron/LofarStMan
This package provides a casacore storage manager to read raw correlator output of the LOFAR telescope.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
LoopTools (more details)
https://feynarts.de/looptools
LoopTools is a package for evaluation of scalar and tensor one-loop integrals. It is based on the FF package by G.J. van Oldenborgh.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Lua (more details)
https://www.lua.org
Lua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
M4 (more details)
https://www.gnu.org/software/m4/m4.html
GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
MAFFT (more details)
https://mafft.cbrc.jp/alignment/software/source.html
MAFFT is a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of less than ∼200 sequences), FFT-NS-2 (fast; for alignment of less than ∼30,000 sequences), etc.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
MAQAO (more details)
https://maqao.org
MAQAO (Modular Assembly Quality Analyzer and Optimizer) is a performance analysis and optimization framework operating at binary level with a focus on core performance. Its main goal of is to guide application developers along the optimization process through synthetic reports and hints. MAQAO mixes both dynamic and static analyses based on its ability to reconstruct high level structures such as functions and loops from an application binary. Since MAQAO operates at binary level, it is agnostic with regard to the language used in the source code and does not require recompiling the application to perform analyses.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
MBX (more details)
https://github.com/paesanilab/MBX
MBX is an energy and force calculator for data-driven many-body simulations
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
MCL (more details)
https://micans.org/mcl
The MCL algorithm is short for the Markov Cluster Algorithm, a fast and scalable unsupervised cluster algorithm for graphs (also known as networks) based on simulation of (stochastic) flow in graphs.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
MDAnalysis (more details)
https://www.mdanalysis.org
MDAnalysis is an object-oriented Python library to analyze trajectories from molecular dynamics (MD) simulations in many popular formats.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
MDI (more details)
https://github.com/MolSSI-MDI/MDI_Library
The MolSSI Driver Interface (MDI) project provides a standardized API for fast, on-the-fly communication between computational chemistry codes. This greatly simplifies the process of implementing methods that require the cooperation of multiple software packages and enables developers to write a single implementation that works across many different codes. The API is sufficiently general to support a wide variety of techniques, including QM/MM, ab initio MD, machine learning, advanced sampling, and path integral MD, while also being straightforwardly extensible. Communication between codes is handled by the MDI Library, which enables tight coupling between codes using either the MPI or TCP/IP methods.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
MEGAHIT (more details)
https://github.com/voutcn/megahit
An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
METIS (more details)
http://glaros.dtc.umn.edu/gkhome/metis/metis/overview, https://karypis.github.io/glaros/projects/gp.html
METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
MLflow (more details)
https://mlflow.org
MLflow is a platform to streamline machine learning development, including tracking experiments, packaging code into reproducible runs, and sharing and deploying models.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
MMseqs2 (more details)
https://mmseqs.com
MMseqs2: ultra fast and sensitive search and clustering suite
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
MODFLOW (more details)
https://www.usgs.gov/mission-areas/water-resources/science/modflow-and-related-programs
MODFLOW is the USGS's modular hydrologic model. MODFLOW is considered an international standard for simulating and predicting groundwater conditions and groundwater/surface-water interactions.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
MPC (more details)
http://www.multiprecision.org
Gnu Mpc is a C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result. It extends the principles of the IEEE-754 standard for fixed precision real floating point numbers to complex numbers, providing well-defined semantics for every operation. At the same time, speed of operation at high precision is a major design goal.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
MPFR (more details)
https://www.mpfr.org
The MPFR library is a C library for multiple-precision floating-point computations with correct rounding.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
MUMPS (more details)
https://mumps-solver.org, https://graal.ens-lyon.fr/MUMPS
A parallel sparse direct solver
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
MUSCLE (more details)
https://drive5.com/muscle
MUSCLE is one of the best-performing multiple alignment programs according to published benchmark tests, with accuracy and speed that are consistently better than CLUSTALW. MUSCLE can align hundreds of sequences in seconds. Most users learn everything they need to know about MUSCLE in a few minutes-only a handful of command-line options are needed to perform common alignment tasks.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Mako (more details)
https://www.makotemplates.org
A super-fast templating language that borrows the best ideas from the existing templating languages
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
MariaDB (more details)
https://mariadb.org
MariaDB is an enhanced, drop-in replacement for MySQL. Included engines: myISAM, Aria, InnoDB, RocksDB, TokuDB, OQGraph, Mroonga.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Markdown (more details)
https://python-markdown.github.io
This is a Python implementation of John Gruber's Markdown. It is almost completely compliant with the reference implementation, though there are a few known issues. Additional features are supported by the Available Extensions.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Mash (more details)
http://mash.readthedocs.org
Fast genome and metagenome distance estimation using MinHash
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Mesa (more details)
https://www.mesa3d.org
Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Meson (more details)
https://mesonbuild.com
Meson is a cross-platform build system designed to be both as fast and as user friendly as possible.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
MetaBAT (more details)
https://bitbucket.org/berkeleylab/metabat
MetaBAT: A robust statistical framework for reconstructing genomes from metagenomic data
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
MetaEuk (more details)
https://metaeuk.soedinglab.org
MetaEuk is a modular toolkit designed for large-scale gene discovery and annotation in eukaryotic metagenomic contigs.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
MetalWalls (more details)
https://gitlab.com/ampere2/metalwalls
MetalWalls (MW) is a molecular dynamics code dedicated to the modelling of electrochemical systems. Its main originality is the inclusion of a series of methods allowing to apply a constant potential within the electrode materials.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
MrBayes (more details)
https://nbisweden.github.io/MrBayes
MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
MultiQC (more details)
https://multiqc.info
Aggregate results from bioinformatics analyses across many samples into a single report. MultiQC searches a given directory for analysis logs and compiles an HTML report. It's a general use tool, perfect for summarising the output from numerous bioinformatics tools.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Mustache (more details)
https://github.com/ay-lab/mustache
Mustache (Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation) is a tool for multi-scale detection of chromatin loops from Hi-C and Micro-C contact maps in high resolutions (10kbp all the way to 500bp and even more). Mustache uses recent technical advances in scale-space theory in Computer Vision to detect chromatin loops caused by interaction of DNA segments with a variable size.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
NASM (more details)
https://www.nasm.us
NASM: General-purpose x86 assembler
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
NCO (more details)
https://github.com/nco/nco
The NCO toolkit manipulates and analyzes data stored in netCDF-accessible formats, including DAP, HDF4, and HDF5.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
NEST (more details)
https://www.nest-simulator.org
NEST is a simulator for spiking neural network models that focuses on the dynamics, size and structure of neural systems rather than on the exact morphology of individual neurons.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
NLTK (more details)
https://www.nltk.org
NLTK is a leading platform for building Python programs to work with human language data.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
NLopt (more details)
http://ab-initio.mit.edu/wiki/index.php/NLopt
NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
NSPR (more details)
https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSPR
Netscape Portable Runtime (NSPR) provides a platform-neutral API for system level and libc-like functions.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
NSS (more details)
https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSS
Network Security Services (NSS) is a set of libraries designed to support cross-platform development of security-enabled client and server applications.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Nextflow (more details)
https://www.nextflow.io
Nextflow is a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Ninja (more details)
https://ninja-build.org
Ninja is a small build system with a focus on speed.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
OPARI2 (more details)
https://www.score-p.org
OPARI2, the successor of Forschungszentrum Juelich's OPARI, is a source-to-source instrumentation tool for OpenMP and hybrid codes. It surrounds OpenMP directives and runtime library calls with calls to the POMP2 measurement interface.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
OSU-Micro-Benchmarks (more details)
https://mvapich.cse.ohio-state.edu/benchmarks
OSU Micro-Benchmarks
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
OTF2 (more details)
https://www.score-p.org
The Open Trace Format 2 is a highly scalable, memory efficient event trace data format plus support library. It is the new standard trace format for Scalasca, Vampir, and TAU and is open for other tools.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Octave (more details)
https://www.gnu.org/software/octave
GNU Octave is a high-level interpreted language, primarily intended for numerical computations.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
OpenBLAS (more details)
https://www.openblas.net, http://www.openblas.net
OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
OpenCV (more details)
https://opencv.org
OpenCV (Open Source Computer Vision Library) is an open source computer vision and machine learning software library. OpenCV was built to provide a common infrastructure for computer vision applications and to accelerate the use of machine perception in the commercial products. Includes extra modules for OpenCV from the contrib repository.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
OpenEXR (more details)
https://www.openexr.com
OpenEXR is a high dynamic-range (HDR) image file format developed by Industrial Light & Magic for use in computer imaging applications
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
OpenFOAM (more details)
https://www.openfoam.org, https://www.openfoam.com
OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
OpenJPEG (more details)
https://www.openjpeg.org
OpenJPEG is an open-source JPEG 2000 codec written in C language. It has been developed in order to promote the use of JPEG 2000, a still-image compression standard from the Joint Photographic Experts Group (JPEG). Since may 2015, it is officially recognized by ISO/IEC and ITU-T as a JPEG 2000 Reference Software.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
OpenMPI (more details)
https://www.open-mpi.org
The Open MPI Project is an open source MPI-3 implementation.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
OpenPGM (more details)
https://code.google.com/p/openpgm
OpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol that enables receivers to detect loss, request retransmission of lost data, or notify an application of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible for ensuring all data is received, absolving the sender of reception responsibility.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
OpenSSL (more details)
https://www.openssl.org
The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Openbox (more details)
http://openbox.org
Highly configurable, lightweight, next-generation window manager with extensive standards support.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
OrthoFinder (more details)
https://github.com/davidemms/OrthoFinder
OrthoFinder is a fast, accurate and comprehensive platform for comparative genomics
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Osi (more details)
https://github.com/coin-or/Osi
Osi (Open Solver Interface) provides an abstract base class to a generic linear programming (LP) solver, along with derived classes for specific solvers. Many applications may be able to use the Osi to insulate themselves from a specific LP solver. That is, programs written to the OSI standard may be linked to any solver with an OSI interface and should produce correct results. The OSI has been significantly extended compared to its first incarnation. Currently, the OSI supports linear programming solvers and has rudimentary support for integer programming.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
PAPI (more details)
https://icl.cs.utk.edu/projects/papi
PAPI provides the tool designer and application engineer with a consistent interface and methodology for use of the performance counter hardware found in most major microprocessors. PAPI enables software engineers to see, in near real time, the relation between software performance and processor events. In addition Component PAPI provides access to a collection of components that expose performance measurement opportunites across the hardware and software stack.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
PCRE (more details)
https://www.pcre.org
The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
PCRE2 (more details)
https://www.pcre.org
The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
PDAL (more details)
https://pdal.io
PDAL is Point Data Abstraction Library. It is a C/C++ open source library and applications for translating and processing point cloud data. It is not limited to LiDAR data, although the focus and impetus for many of the tools in the library have their origins in LiDAR.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
PDT (more details)
https://www.cs.uoregon.edu/research/pdt
Program Database Toolkit (PDT) is a framework for analyzing source code written in several programming languages and for making rich program knowledge accessible to developers of static and dynamic analysis tools. PDT implements a standard program representation, the program database (PDB), that can be accessed in a uniform way through a class library supporting common PDB operations.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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PETSc (more details)
https://www.mcs.anl.gov/petsc
PETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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PGPLOT (more details)
https://sites.astro.caltech.edu/~tjp/pgplot
The PGPLOT Graphics Subroutine Library is a Fortran- or C-callable, device-independent graphics package for making simple scientific graphs. It is intended for making graphical images of publication quality with minimum effort on the part of the user. For most applications, the program can be device-independent, and the output can be directed to the appropriate device at run time.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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PLUMED (more details)
https://www.plumed.org
PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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PLY (more details)
https://www.dabeaz.com/ply
PLY is yet another implementation of lex and yacc for Python.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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PMIx (more details)
https://pmix.org
Process Management for Exascale Environments PMI Exascale (PMIx) represents an attempt to provide an extended version of the PMI standard specifically designed to support clusters up to and including exascale sizes. The overall objective of the project is not to branch the existing pseudo-standard definitions - in fact, PMIx fully supports both of the existing PMI-1 and PMI-2 APIs - but rather to (a) augment and extend those APIs to eliminate some current restrictions that impact scalability, and (b) provide a reference implementation of the PMI-server that demonstrates the desired level of scalability.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
PROJ (more details)
https://proj.org
Program proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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PRRTE (more details)
https://docs.prrte.org
PRRTE is the PMIx Reference RunTime Environment
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Pandoc (more details)
https://pandoc.org
If you need to convert files from one markup format into another, pandoc is your swiss-army knife
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Pango (more details)
https://www.pango.org
Pango is a library for laying out and rendering of text, with an emphasis on internationalization. Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in the context of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
ParMETIS (more details)
http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview
ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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ParaView (more details)
https://www.paraview.org
ParaView is a scientific parallel visualizer.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Paraver (more details)
https://tools.bsc.es/paraver
A very powerful performance visualization and analysis tool based on traces that can be used to analyse any information that is expressed on its input trace format. Traces for parallel MPI, OpenMP and other programs can be genereated with Extrae.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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Perl (more details)
https://www.perl.org
Larry Wall's Practical Extraction and Report Language Includes a small selection of extra CPAN packages for core functionality.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Perl-bundle-CPAN (more details)
https://www.perl.org
A set of common packages from CPAN
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Pillow (more details)
https://pillow.readthedocs.org
Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Pillow-SIMD (more details)
https://github.com/uploadcare/pillow-simd
Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Pint (more details)
https://github.com/hgrecco/pint
Pint is a Python package to define, operate and manipulate physical quantities: the product of a numerical value and a unit of measurement. It allows arithmetic operations between them and conversions from and to different units.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
PnetCDF (more details)
https://parallel-netcdf.github.io
Parallel netCDF: A Parallel I/O Library for NetCDF File Access
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
PostgreSQL (more details)
https://www.postgresql.org
PostgreSQL is a powerful, open source object-relational database system. It is fully ACID compliant, has full support for foreign keys, joins, views, triggers, and stored procedures (in multiple languages). It includes most SQL:2008 data types, including INTEGER, NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and TIMESTAMP. It also supports storage of binary large objects, including pictures, sounds, or video. It has native programming interfaces for C/C++, Java, .Net, Perl, Python, Ruby, Tcl, ODBC, among others, and exceptional documentation.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
PuLP (more details)
https://github.com/coin-or/pulp
PuLP is an LP modeler written in Python. PuLP can generate MPS or LP files and call GLPK, COIN-OR CLP/CBC, CPLEX, GUROBI, MOSEK, XPRESS, CHOCO, MIPCL, SCIP to solve linear problems.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
PyCairo (more details)
https://pycairo.readthedocs.io
Python bindings for the cairo library
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
PyEVTK (more details)
https://github.com/paulo-herrera/PyEVTK
EVTK (Export VTK) package allows exporting data to binary VTK files for visualization and data analysis with any of the visualization packages that support VTK files
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
PyGObject (more details)
https://pygobject.readthedocs.io
PyGObject is a Python package which provides bindings for GObject based libraries such as GTK, GStreamer, WebKitGTK, GLib, GIO and many more.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
PyOpenGL (more details)
http://pyopengl.sourceforge.net
PyOpenGL is the most common cross platform Python binding to OpenGL and related APIs.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
PyQt-builder (more details)
http://www.example.com
PyQt-builder is the PEP 517 compliant build system for PyQt and projects that extend PyQt. It extends the SIP build system and uses Qt’s qmake to perform the actual compilation and installation of extension modules.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
PyQt5 (more details)
https://www.riverbankcomputing.com/software/pyqt
PyQt5 is a set of Python bindings for v5 of the Qt application framework from The Qt Company. This bundle includes PyQtWebEngine, a set of Python bindings for The Qt Company’s Qt WebEngine framework.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
PyTables (more details)
https://www.pytables.org
PyTables is a package for managing hierarchical datasets and designed to efficiently and easily cope with extremely large amounts of data. PyTables is built on top of the HDF5 library, using the Python language and the NumPy package. It features an object-oriented interface that, combined with C extensions for the performance-critical parts of the code (generated using Cython), makes it a fast, yet extremely easy to use tool for interactively browsing, processing and searching very large amounts of data. One important feature of PyTables is that it optimizes memory and disk resources so that data takes much less space (specially if on-flight compression is used) than other solutions such as relational or object oriented databases.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
PyTorch (more details)
https://pytorch.org
Tensors and Dynamic neural networks in Python with strong GPU acceleration. PyTorch is a deep learning framework that puts Python first.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
PyVO (more details)
https://pyvo.readthedocs.io
PyVO lets you find and retrieve astronomical data available from archives that support standard IVOA virtual observatory service protocols.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
PyYAML (more details)
https://github.com/yaml/pyyaml
PyYAML is a YAML parser and emitter for the Python programming language.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
PyZMQ (more details)
https://www.zeromq.org/bindings:python
Python bindings for ZeroMQ
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Pygments (more details)
https://pygments.org
Generic syntax highlighter suitable for use in code hosting, forums, wikis or other applications that need to prettify source code.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Pysam (more details)
https://github.com/pysam-developers/pysam
Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Python (more details)
https://python.org
Python is a programming language that lets you work more quickly and integrate your systems more effectively.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Python-bundle-PyPI (more details)
https://python.org
Bundle of Python packages from PyPI
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
QScintilla (more details)
https://www.riverbankcomputing.com/software/qscintilla
QScintilla is a port to Qt of Neil Hodgson's Scintilla C++ editor control
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Qhull (more details)
http://www.qhull.org
Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Qt5 (more details)
https://qt.io
Qt is a comprehensive cross-platform C++ application framework.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Qt6 (more details)
https://qt.io
Qt is a comprehensive cross-platform C++ application framework.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
QuantumESPRESSO (more details)
https://www.quantum-espresso.org
Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft).
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
R (more details)
https://www.r-project.org
R is a free software environment for statistical computing and graphics.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
R-bundle-Bioconductor (more details)
https://bioconductor.org
Bioconductor provides tools for the analysis and coprehension of high-throughput genomic data.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
R-bundle-CRAN (more details)
https://www.r-project.org
Bundle of R packages from CRAN
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
RAxML (more details)
https://github.com/stamatak/standard-RAxML
RAxML search algorithm for maximum likelihood based inference of phylogenetic trees.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
RDFlib (more details)
https://github.com/RDFLib/rdflib
RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
RDKit (more details)
https://www.rdkit.org
RDKit is a collection of cheminformatics and machine-learning software written in C++ and Python.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
RE2 (more details)
https://github.com/google/re2
RE2 is a fast, safe, thread-friendly alternative to backtracking regular expression engines like those used in PCRE, Perl, and Python. It is a C++ library.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
RMextract (more details)
https://github.com/lofar-astron/RMextract
Extract TEC, vTEC, Earthmagnetic field and Rotation Measures from GPS and WMM data for radio interferometry observations
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
ROOT (more details)
https://root.cern.ch/drupal, https://root.cern.ch
The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data in a very efficient way.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
RStudio-Server (more details)
https://www.rstudio.com
This is the RStudio Server version. RStudio is a set of integrated tools designed to help you be more productive with R. The server can be started with: rserver --server-daemonize=0 --www-port=8787 If you need a database config one can be created with: MYTMP=
Available in EESSI versions: 2023.062025.06mktemp -d&& echo -e "provider=sqlite\ndirectory=${MYTMP}/sqlite" more than "${MYTMP}/db.conf" and then used with: rserver ... --database-config-file="${MYTMP}/db.conf"
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
RapidJSON (more details)
https://rapidjson.org
A fast JSON parser/generator for C++ with both SAX/DOM style API
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Raptor (more details)
https://librdf.org/raptor
Set of parsers and serializers that generate Resource Description Framework (RDF) triples by parsing syntaxes or serialize the triples into a syntax.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Rasqal (more details)
hhttps://librdf.org/rasqal
A library handling RDF query syntaxes, construction and execution
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
ReFrame (more details)
https://github.com/reframe-hpc/reframe
ReFrame is a framework for writing regression tests for HPC systems.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Redis (more details)
https://redis.io
Redis is an open source (BSD licensed), in-memory data structure store, used as a database, cache, and message broker. Redis provides data structures such as strings, hashes, lists, sets, sorted sets with range queries, bitmaps, hyperloglogs, geospatial indexes, and streams. Redis has built-in replication, Lua scripting, LRU eviction, transactions, and different levels of on-disk persistence, and provides high availability via Redis Sentinel and automatic partitioning with Redis Cluster.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Redland (more details)
https://librdf.org/raptor
Redland is a set of free software C libraries that provide support for the Resource Description Framework (RDF).
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Rivet (more details)
https://gitlab.com/hepcedar/rivet
Rivet toolkit (Robust Independent Validation of Experiment and Theory) To use your own analysis you must append the path to
Available in EESSI versions: 2023.06RIVET_ANALYSIS_PATH.
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Ruby (more details)
https://www.ruby-lang.org
Ruby is a dynamic, open source programming language with a focus on simplicity and productivity. It has an elegant syntax that is natural to read and easy to write.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Rust (more details)
https://www.rust-lang.org
Rust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
SAGECal (more details)
https://sagecal.sourceforge.net
SAGECal is a fast, distributed and GPU accelerated radio astronomial calibration package. The many optimization algorithms in SAGECal are implemented in a computationally efficient way and can be used in many other applications.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
SAMtools (more details)
https://www.htslib.org
SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
SCOTCH (more details)
https://www.labri.fr/perso/pelegrin/scotch
Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
SDL2 (more details)
https://www.libsdl.org
SDL: Simple DirectMedia Layer, a cross-platform multimedia library
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
SEPP (more details)
https://github.com/smirarab/sepp
SATe-enabled Phylogenetic Placement - addresses the problem of phylogenetic placement of short reads into reference alignments and trees.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
SIONlib (more details)
https://www.fz-juelich.de/ias/jsc/EN/Expertise/Support/Software/SIONlib/_node.html
SIONlib is a scalable I/O library for parallel access to task-local files. The library not only supports writing and reading binary data to or from several thousands of processors into a single or a small number of physical files, but also provides global open and close functions to access SIONlib files in parallel. This package provides a stripped-down installation of SIONlib for use with performance tools (e.g., Score-P), with renamed symbols to avoid conflicts when an application using SIONlib itself is linked against a tool requiring a different SIONlib version.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
SIP (more details)
http://www.riverbankcomputing.com/software/sip
SIP is a tool that makes it very easy to create Python bindings for C and C++ libraries.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
SLEPc (more details)
https://slepc.upv.es
SLEPc (Scalable Library for Eigenvalue Problem Computations) is a software library for the solution of large scale sparse eigenvalue problems on parallel computers. It is an extension of PETSc and can be used for either standard or generalized eigenproblems, with real or complex arithmetic. It can also be used for computing a partial SVD of a large, sparse, rectangular matrix, and to solve quadratic eigenvalue problems.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
SOCI (more details)
http://soci.sourceforge.net
SOCI is a database access library for C++ that makes the illusion of embedding SQL queries in the regular C++ code, staying entirely within the Standard C++.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
SQLAlchemy (more details)
https://www.sqlalchemy.org
SQLAlchemy is the Python SQL toolkit and Object Relational Mapper that gives application developers the full power and flexibility of SQL. SQLAlchemy provides a full suite of well known enterprise-level persistence patterns, designed for efficient and high-performing database access, adapted into a simple and Pythonic domain language.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
SQLite (more details)
https://www.sqlite.org
SQLite: SQL Database Engine in a C Library
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
STAR (more details)
https://github.com/alexdobin/STAR
STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
SUNDIALS (more details)
https://computing.llnl.gov/projects/sundials
SUNDIALS: SUite of Nonlinear and DIfferential/ALgebraic Equation Solvers
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
SWIG (more details)
http://www.swig.org
SWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Salmon (more details)
https://github.com/COMBINE-lab/salmon
Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimate from RNA-seq data.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
ScaFaCoS (more details)
http://www.scafacos.de
ScaFaCoS is a library of scalable fast coulomb solvers.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntel
Supported GPU families: AMD NVIDIA
-
ScaLAPACK (more details)
https://www.netlib.org/scalapack
The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
SciPy-bundle (more details)
https://python.org
Bundle of Python packages for scientific software
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
SciTools-Iris (more details)
https://scitools-iris.readthedocs.io
A powerful, format-agnostic, community-driven Python package for analysing and visualising Earth science data.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Score-P (more details)
https://www.score-p.org
The Score-P measurement infrastructure is a highly scalable and easy-to-use tool suite for profiling, event tracing, and online analysis of HPC applications.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Seaborn (more details)
https://seaborn.pydata.org
Seaborn is a Python visualization library based on matplotlib. It provides a high-level interface for drawing attractive statistical graphics.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Shapely (more details)
https://github.com/Toblerity/Shapely
Shapely is a BSD-licensed Python package for manipulation and analysis of planar geometric objects. It is based on the widely deployed GEOS (the engine of PostGIS) and JTS (from which GEOS is ported) libraries.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Siesta (more details)
https://siesta-project.org/siesta/About/overview.html
SIESTA is both a method and its computer program implementation, to perform efficient electronic structure calculations and ab initio molecular dynamics simulations of molecules and solids.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Simple-DFTD3 (more details)
https://dftd3.readthedocs.io
Reimplementation of the D3 dispersion correction. The s-dftd3 project aims to provide a user-friendly and uniform interface to the D3 dispersion model and for the calculation of DFT-D3 dispersion corrections.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
SlurmViewer (more details)
https://gitlab.com/lkeb/slurm_viewer
View the status of a Slurm cluster, including nodes and queue.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Solids4foam (more details)
https://www.solids4foam.com
A toolbox for performing solid mechanics and fluid-solid interactions in OpenFOAM.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Subread (more details)
https://subread.sourceforge.net
High performance read alignment, quantification and mutation discovery
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
SuiteSparse (more details)
https://faculty.cse.tamu.edu/davis/suitesparse.html
SuiteSparse is a collection of libraries to manipulate sparse matrices.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
SuperLU_DIST (more details)
https://crd-legacy.lbl.gov/~xiaoye/SuperLU
SuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Szip (more details)
https://docs.hdfgroup.org/archive/support/doc_resource/SZIP/index.html, https://www.hdfgroup.org/doc_resource/SZIP
Szip compression software, providing lossless compression of scientific data
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
TOML-Fortran (more details)
https://github.com/toml-f/toml-f
TOML parser for Fortran projects
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Tcl (more details)
https://www.tcl.tk
Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
TensorFlow (more details)
https://www.tensorflow.org
An open-source software library for Machine Intelligence
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Tk (more details)
https://www.tcl.tk
Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Tkinter (more details)
https://python.org
Tkinter module, built with the Python buildsystem
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Tombo (more details)
https://github.com/nanoporetech/tombo
Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Transrate (more details)
https://hibberdlab.com/transrate
Transrate is software for de-novo transcriptome assembly quality analysis. It examines your assembly in detail and compares it to experimental evidence such as the sequencing reads, reporting quality scores for contigs and assemblies. This allows you to choose between assemblers and parameters, filter out the bad contigs from an assembly, and help decide when to stop trying to improve the assembly.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Trimmomatic (more details)
http://www.usadellab.org/cms/?page=trimmomatic
Trimmomatic performs a variety of useful trimming tasks for illumina paired-end and single ended data.The selection of trimming steps and their associated parameters are supplied on the command line.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
TurboVNC (more details)
https://www.turbovnc.org
TurboVNC is a derivative of VNC (Virtual Network Computing) that is tuned to provide peak performance for 3D and video workloads.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
UCC (more details)
https://www.openucx.org
UCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
UCX (more details)
https://www.openucx.org
Unified Communication X An open-source production grade communication framework for data centric and high-performance applications
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
UDUNITS (more details)
https://www.unidata.ucar.edu/software/udunits
UDUNITS supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of units, and conversion of values between compatible scales of measurement.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
UnZip (more details)
http://www.info-zip.org/UnZip.html
UnZip is an extraction utility for archives compressed in .zip format (also called "zipfiles"). Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own Zip program, our primary objectives have been portability and non-MSDOS functionality.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
VCFtools (more details)
https://vcftools.github.io
The aim of VCFtools is to provide easily accessible methods for working with complex genetic variation data in the form of VCF files.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
VSEARCH (more details)
https://github.com/torognes/vsearch
VSEARCH supports de novo and reference based chimera detection, clustering, full-length and prefix dereplication, rereplication, reverse complementation, masking, all-vs-all pairwise global alignment, exact and global alignment searching, shuffling, subsampling and sorting. It also supports FASTQ file analysis, filtering, conversion and merging of paired-end reads.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
VTK (more details)
https://www.vtk.org
The Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK consists of a C++ class library and several interpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualization algorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniques such as: implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Valgrind (more details)
https://valgrind.org
Valgrind: Debugging and profiling tools
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
VeloxChem (more details)
https://veloxchem.org/docs/intro.html
VeloxChem [RLV+20] is a Python-based open source quantum chemistry software for contemporary and future hardware architectures. It features interactive program access through Jupyter notebooks as well as massively parallel calculations in high-performance computing (HPC) environments.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Vim (more details)
http://www.vim.org
Vim is an advanced text editor that seeks to provide the power of the de-facto Unix editor 'Vi', with a more complete feature set.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Voro++ (more details)
http://math.lbl.gov/voro++
Voro++ is a software library for carrying out three-dimensional computations of the Voronoi tessellation. A distinguishing feature of the Voro++ library is that it carries out cell-based calculations, computing the Voronoi cell for each particle individually. It is particularly well-suited for applications that rely on cell-based statistics, where features of Voronoi cells (eg. volume, centroid, number of faces) can be used to analyze a system of particles.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
WCSLIB (more details)
https://www.atnf.csiro.au/people/mcalabre/WCS
The FITS "World Coordinate System" (WCS) standard defines keywords and usage that provide for the description of astronomical coordinate systems in a FITS image header.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
WRF (more details)
https://www.mmm.ucar.edu/models/wrf, https://www.wrf-model.org
The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale numerical weather prediction system designed to serve both operational forecasting and atmospheric research needs.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
WSClean (more details)
https://wsclean.readthedocs.io
WSClean (w-stacking clean) is a fast generic widefield imager. It implements several gridding algorithms and offers fully-automated multi-scale multi-frequency deconvolution.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Wayland (more details)
https://wayland.freedesktop.org
Wayland is a project to define a protocol for a compositor to talk to its clients as well as a library implementation of the protocol. The compositor can be a standalone display server running on Linux kernel modesetting and evdev input devices, an X application, or a wayland client itself. The clients can be traditional applications, X servers (rootless or fullscreen) or other display servers.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Waylandpp (more details)
https://github.com/NilsBrause/waylandpp
Wayland is an object oriented display protocol, which features request and events. Requests can be seen as method calls on certain objects, whereas events can be seen as signals of an object. This makes the Wayland protocol a perfect candidate for a C++ binding. The goal of this library is to create such a C++ binding for Wayland using the most modern C++ technology currently available, providing an easy to use C++ API to Wayland.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
WebKitGTK+ (more details)
https://webkitgtk.org
WebKitGTK+ is a full-featured port of the WebKit rendering engine, suitable for projects requiring any kind of web integration, from hybrid HTML/CSS applications to full-fledged web browsers. It offers WebKit's full functionality and is useful in a wide range of systems from desktop computers to embedded systems like phones, tablets, and televisions.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
WhatsHap (more details)
https://whatshap.readthedocs.io
WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long reads, but works also well with short reads.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
X11 (more details)
https://www.x.org
The X Window System (X11) is a windowing system for bitmap displays
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
XML-LibXML (more details)
https://metacpan.org/pod/distribution/XML-LibXML/LibXML.pod
Perl binding for libxml2
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Xerces-C++ (more details)
https://xerces.apache.org/xerces-c
Xerces-C++ is a validating XML parser written in a portable subset of C++. Xerces-C++ makes it easy to give your application the ability to read and write XML data. A shared library is provided for parsing, generating, manipulating, and validating XML documents using the DOM, SAX, and SAX2 APIs.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Xvfb (more details)
https://www.x.org/releases/X11R7.6/doc/man/man1/Xvfb.1.xhtml
Xvfb is an X server that can run on machines with no display hardware and no physical input devices. It emulates a dumb framebuffer using virtual memory.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
YODA (more details)
https://yoda.hepforge.org
Yet more Objects for (High Energy Physics) Data Analysis
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Yasm (more details)
https://www.tortall.net/projects/yasm
Yasm: Complete rewrite of the NASM assembler with BSD license
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntel
Supported GPU families: AMD NVIDIA
-
Z3 (more details)
https://github.com/Z3Prover/z3
Z3 is a theorem prover from Microsoft Research with support for bitvectors, booleans, arrays, floating point numbers, strings, and other data types. This module includes z3-solver, the Python interface of Z3.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
ZeroMQ (more details)
https://www.zeromq.org
ZeroMQ looks like an embeddable networking library but acts like a concurrency framework. It gives you sockets that carry atomic messages across various transports like in-process, inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, pub-sub, task distribution, and request-reply. It's fast enough to be the fabric for clustered products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous message-processing tasks. It has a score of language APIs and runs on most operating systems.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Zip (more details)
http://www.info-zip.org/Zip.html
Zip is a compression and file packaging/archive utility. Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own UnZip, our primary objectives have been portability and other-than-MSDOS functionality
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
Zoltan (more details)
https://sandialabs.github.io/Zoltan
Zoltan Dynamic Load Balancing and Graph Algorithm Toolkit
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
absl-py (more details)
https://github.com/abseil/abseil-py
absl-py is a collection of Python library code for building Python applications. The code is collected from Google's own Python code base, and has been extensively tested and used in production.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
aiida-core (more details)
https://www.aiida.net
Bundle of Python packages required to run AiiDA. An open-source Python infrastructure to help researchers with automating, managing, persisting, sharing and reproducing the complex workflows associated with modern computational science and all associated data.
Available in EESSI versions:
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
aiida-shell (more details)
https://aiida-shell.readthedocs.io/en/latest
AiiDA plugin that makes running shell commands easy. Run any shell executable without writing a dedicated plugin or parser.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
aiohttp (more details)
https://github.com/aio-libs/aiohttp
Asynchronous HTTP client/server framework for asyncio and Python.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
amdahl (more details)
https://github.com/hpc-carpentry/amdahl
This Python module contains a pseudo-application that can be used as a black box to reproduce Amdahl's Law. It does not do real calculations, nor any real communication, so can easily be overloaded.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
anndata (more details)
https://github.com/scverse/anndata
anndata is a Python package for handling annotated data matrices in memory and on disk, positioned between pandas and xarray
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
ant (more details)
https://ant.apache.org
Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
archspec (more details)
https://github.com/archspec/archspec
A library for detecting, labeling, and reasoning about microarchitectures
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
arpack-ng (more details)
https://github.com/opencollab/arpack-ng
ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
arrow-R (more details)
https://cran.r-project.org/web/packages/arrow
R interface to the Apache Arrow C++ library
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
assimp (more details)
https://github.com/assimp/assimp
Open Asset Import Library (assimp) is a library to import and export various 3d-model-formats including scene-post-processing to generate missing render data.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
astropy (more details)
https://www.astropy.org
The Astropy Project is a community effort to develop a common core package for Astronomy in Python and foster an ecosystem of interoperable astronomy packages. The Astropy community is committed to supporting diversity and inclusion.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
astropy-testing (more details)
https://www.astropy.org
This bundle contains all dependencies needed to test astropy using pytest.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
at-spi2-atk (more details)
https://wiki.gnome.org/Accessibility
AT-SPI 2 toolkit bridge
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
at-spi2-core (more details)
https://wiki.gnome.org/Accessibility
Assistive Technology Service Provider Interface.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
attrdict3 (more details)
https://github.com/pirofti/AttrDict3
AttrDict is a Python library that provides mapping objects that allow their elements to be accessed both as keys and as attributes.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
basemap (more details)
https://matplotlib.org/basemap
The matplotlib basemap toolkit is a library for plotting 2D data on maps in Python
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
bcgTree (more details)
https://github.com/molbiodiv/bcgTree
Automatized phylogenetic tree building from bacterial core genomes.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
bcrypt (more details)
https://github.com/pyca/bcrypt
Acceptable password hashing for your software and your servers (but you should really use argon2id or scrypt)
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
beagle-lib (more details)
https://github.com/beagle-dev/beagle-lib
beagle-lib is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
biom-format (more details)
https://biom-format.org
The BIOM file format (canonically pronounced biome) is designed to be a general-use format for representing biological sample by observation contingency tables. BIOM is a recognized standard for the Earth Microbiome Project and is a Genomics Standards Consortium supported project.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
bokeh (more details)
https://github.com/bokeh/bokeh
Statistical and novel interactive HTML plots for Python
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
boto3 (more details)
https://github.com/boto/boto3
Boto3 is the Amazon Web Services (AWS) Software Development Kit (SDK) for Python, which allows Python developers to write software that makes use of services like Amazon S3 and Amazon EC2.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
build (more details)
https://github.com/pypa/build
A simple, correct Python build frontend.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
This module sets a group of environment variables for compilers, linkers, maths libraries, etc., that you can use to easily transition between toolchains when building your software. To query the variables being set please use: module show less than this module namemore than
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
c-ares (more details)
https://c-ares.org
c-ares is a C library for asynchronous DNS requests (including name resolves)
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
cURL (more details)
https://curl.haxx.se
libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
caddy (more details)
https://caddyserver.com
Fast and extensible multi-platform HTTP/1-2-3 web server with automatic HTTPS
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
cairo (more details)
https://cairographics.org
Cairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
cargo-c (more details)
https://github.com/lu-zero/cargo-c
Applet for cargo to build and install C-ABI compatible dynamic and static libraries. It produces and installs a correct pkg-config file, a static library and a dynamic library, and a C header to be used by any C (and C-compatible) software.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
casacore (more details)
https://github.com/casacore/casacore
A suite of C++ libraries for radio astronomy data processing. The ephemerides data needs to be in DATA_DIR and the location must be specified at runtime. Thus user's can update them.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
ccache (more details)
https://ccache.dev
Ccache (or “ccache”) is a compiler cache. It speeds up recompilation by caching previous compilations and detecting when the same compilation is being done again
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
cffi (more details)
https://cffi.readthedocs.io/en/latest
C Foreign Function Interface for Python. Interact with almost any C code from Python, based on C-like declarations that you can often copy-paste from header files or documentation.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
cimfomfa (more details)
https://github.com/micans/cimfomfa
This library supports both MCL, a cluster algorithm for graphs, and zoem, a macro/DSL language. It supplies abstractions for memory management, I/O, associative arrays, strings, heaps, and a few other things. The string library has had heavy testing as part of zoem. Both understandably and regrettably I chose long ago to make it C-string-compatible, hence nul bytes may not be part of a string. At some point I hope to rectify this, perhaps unrealistically.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
colorize (more details)
https://github.com/fazibear/colorize
Ruby gem for colorizing text using ANSI escape sequences. Extends String class or add a ColorizedString with methods to set the text color, background color and text effects.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
cooler (more details)
https://open2c.github.io/cooler
Cooler is a support library for a storage format, also called cooler, used to store genomic interaction data of any size, such as Hi-C contact matrices.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
coverage (more details)
https://coverage.readthedocs.io
Coverage.py is a tool for measuring code coverage of Python programs. It monitors your program, noting which parts of the code have been executed, then analyzes the source to identify code that could have been executed but was not.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
cpio (more details)
https://savannah.gnu.org/projects/cpio
The cpio package contains tools for archiving.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
cppy (more details)
https://github.com/nucleic/cppy
A small C++ header library which makes it easier to write Python extension modules. The primary feature is a PyObject smart pointer which automatically handles reference counting and provides convenience methods for performing common object operations.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
crb-blast (more details)
https://github.com/cboursnell/crb-blast
Conditional Reciprocal Best BLAST - high confidence ortholog assignment.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
cryptography (more details)
https://github.com/pyca/cryptography
cryptography is a package designed to expose cryptographic primitives and recipes to Python developers.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
cutadapt (more details)
https://opensource.scilifelab.se/projects/cutadapt
Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
cwltool (more details)
https://cwltool.readthedocs.io
This is the reference implementation of the Common Workflow Language open standards. It is intended to be feature complete and provide comprehensive validation of CWL files as well as provide other tools related to working with CWL.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
dask (more details)
https://dask.org
Dask natively scales Python. Dask provides advanced parallelism for analytics, enabling performance at scale for the tools you love.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
dftd4 (more details)
https://dftd4.readthedocs.io
The dftd4 project provides an implementation of the generally applicable, charge dependent London-dispersion correction, termed DFT-D4.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
dill (more details)
https://pypi.org/project/dill
dill extends python's pickle module for serializing and de-serializing python objects to the majority of the built-in python types. Serialization is the process of converting an object to a byte stream, and the inverse of which is converting a byte stream back to on python object hierarchy.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
dlb (more details)
https://pm.bsc.es/dlb
DLB is a dynamic library designed to speed up HPC hybrid applications (i.e., two levels of parallelism) by improving the load balance of the outer level of parallelism (e.g., MPI) by dynamically redistributing the computational resources at the inner level of parallelism (e.g., OpenMP). at run time.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
dm-tree (more details)
https://github.com/deepmind/tree
dm-tree provides tree, a library for working with nested data structures. In a way, tree generalizes the builtin map function which only supports flat sequences, and allows to apply a function to each "leaf" preserving the overall structure.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
double-conversion (more details)
https://github.com/google/double-conversion
Efficient binary-decimal and decimal-binary conversion routines for IEEE doubles.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
dysco (more details)
https://github.com/aroffringa/dysco
The Dysco compression technique is explained in the article "Compression of interferometric radio-astronomical data", A. R. Offringa (2016; http://arxiv.org/abs/1609.02019). If you use this software, please cite the paper.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
ecBuild (more details)
https://ecbuild.readthedocs.io
A CMake-based build system, consisting of a collection of CMake macros and functions that ease the managing of software build systems
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
ecCodes (more details)
https://software.ecmwf.int/wiki/display/ECC/ecCodes+Home
ecCodes is a package developed by ECMWF which provides an application programming interface and a set of tools for decoding and encoding messages in the following formats: WMO FM-92 GRIB edition 1 and edition 2, WMO FM-94 BUFR edition 3 and edition 4, WMO GTS abbreviated header (only decoding).
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
elfutils (more details)
https://elfutils.org
The elfutils project provides libraries and tools for ELF files and DWARF data.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
elfx86exts (more details)
https://github.com/pkgw/elfx86exts
Decode binaries and print out which instruction set extensions they use.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
enchant-2 (more details)
http://rrthomas.github.io/enchant
Enchant aims to provide a simple but comprehensive abstraction for dealing with different spell checking libraries in a consistent way. A client, such as a text editor or word processor, need not know anything about a specific spell-checker, and since all back-ends are plugins, new spell-checkers can be added without needing any change to the program using Enchant.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
expat (more details)
https://libexpat.github.io
Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags).
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
expecttest (more details)
https://github.com/ezyang/expecttest
This library implements expect tests (also known as "golden" tests). Expect tests are a method of writing tests where instead of hard-coding the expected output of a test, you run the test to get the output, and the test framework automatically populates the expected output. If the output of the test changes, you can rerun the test with the environment variable EXPECTTEST_ACCEPT=1 to automatically update the expected output.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
f90wrap (more details)
https://github.com/jameskermode/f90wrap
f90wrap is a tool to automatically generate Python extension modules which interface to Fortran code that makes use of derived types. It builds on the capabilities of the popular f2py utility by generating a simpler Fortran 90 interface to the original Fortran code which is then suitable for wrapping with f2py, together with a higher-level Pythonic wrapper that makes the existance of an additional layer transparent to the final user.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
fastjet (more details)
https://fastjet.fr
A software package for jet finding in pp and e+e- collisions
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
fastjet-contrib (more details)
https://fastjet.hepforge.org/contrib
3rd party extensions of FastJet
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
fastp (more details)
https://github.com/OpenGene/fastp
A tool designed to provide fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
feh (more details)
https://feh.finalrewind.org
feh is an X11 image viewer aimed mostly at console users. Unlike most other viewers, it does not have a fancy GUI, but simply displays images. It is controlled via commandline arguments and configurable key/mouse actions.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
ffnvcodec (more details)
https://git.videolan.org/?p=ffmpeg/nv-codec-headers.git
FFmpeg nvidia headers. Adds support for nvenc and nvdec. Requires Nvidia GPU and drivers to be present (picked up dynamically).
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
flatbuffers (more details)
https://github.com/google/flatbuffers
FlatBuffers: Memory Efficient Serialization Library
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
flatbuffers-python (more details)
https://github.com/google/flatbuffers
Python Flatbuffers runtime library.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
flit (more details)
https://github.com/pypa/flit
A simple packaging tool for simple packages.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
flook (more details)
https://github.com/ElectronicStructureLibrary/flook
The fortran-Lua-hook library.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
fontconfig (more details)
https://www.freedesktop.org/wiki/Software/fontconfig
Fontconfig is a library designed to provide system-wide font configuration, customization and application access.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
fonttools (more details)
https://python-markdown.github.io
fontTools is a library for manipulating fonts, written in Python. The project includes the TTX tool, that can convert TrueType and OpenType fonts to and from an XML text format, which is also called TTX. It supports TrueType, OpenType, AFM and to an extent Type 1 and some Mac-specific formats.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
foss (more details)
https://docs.easybuild.io/common-toolchains/#common_toolchains_foss, https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain
GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
freeglut (more details)
http://freeglut.sourceforge.net
freeglut is a completely OpenSourced alternative to the OpenGL Utility Toolkit (GLUT) library.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
freetype (more details)
https://www.freetype.org
FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
gawk (more details)
https://www.gnu.org/software/gawk
The awk utility interprets a special-purpose programming language that makes it possible to handle simple data-reformatting jobs with just a few lines of code.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
gc (more details)
https://hboehm.info/gc
The Boehm-Demers-Weiser conservative garbage collector can be used as a garbage collecting replacement for C malloc or C++ new.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
gengetopt (more details)
https://www.gnu.org/software/gengetopt/gengetopt.html
Gengetopt is a tool to write command line option parsing code for C programs.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
geopandas (more details)
https://geopandas.org
GeoPandas is a project to add support for geographic data to pandas objects. It currently implements GeoSeries and GeoDataFrame types which are subclasses of pandas.Series and pandas.DataFrame respectively. GeoPandas objects can act on shapely geometry objects and perform geometric operations.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
GNU Compiler Collection (GCC) based compiler toolchain, including FlexiBLAS (BLAS and LAPACK support) and (serial) FFTW.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
giflib (more details)
http://giflib.sourceforge.net
giflib is a library for reading and writing gif images. It is API and ABI compatible with libungif which was in wide use while the LZW compression algorithm was patented.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
git (more details)
https://git-scm.com
Git is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
glew (more details)
https://github.com/nigels-com/glew
The OpenGL Extension Wrangler Library (GLEW) is a cross-platform open-source C/C++ extension loading library. GLEW provides efficient run-time mechanisms for determining which OpenGL extensions are supported on the target platform.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
glib-networking (more details)
https://gitlab.gnome.org/GNOME/glib-networking
Network extensions for GLib
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
glslang-SPIRV (more details)
https://www.khronos.org/opengles/sdk/tools/Reference-Compiler
Glslang is the official reference compiler front end for the OpenGL ES and OpenGL shading languages. It implements a strict interpretation of the specifications for these languages. It is open and free for anyone to use, either from a command line or programmatically. The OpenGL and OpenGL ES working groups are committed to maintaining consistency between the reference compiler and the corresponding shading language specifications.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
gmpy2 (more details)
https://github.com/aleaxit/gmpy
GMP/MPIR, MPFR, and MPC interface to Python 2.6+ and 3.x
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
gmsh (more details)
https://gmsh.info
Gmsh is a 3D finite element grid generator with a build-in CAD engine and post-processor.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
gnuplot (more details)
http://gnuplot.sourceforge.net
Portable interactive, function plotting utility
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
googleapis-python (more details)
https://googleapis.github.io
Clients and tools for Google APIs in Python
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
googletest (more details)
https://github.com/google/googletest
Google's framework for writing C++ tests on a variety of platforms
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
graphite2 (more details)
https://scripts.sil.org/cms/scripts/page.php?site_id=projects&item_id=graphite_home
Graphite is a "smart font" system developed specifically to handle the complexities of lesser-known languages of the world.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
groff (more details)
https://www.gnu.org/software/groff
Groff (GNU troff) is a typesetting system that reads plain text mixed with formatting commands and produces formatted output.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
grpcio (more details)
https://grpc.io
gRPC is a modern, open source, high-performance remote procedure call (RPC) framework that can run anywhere. gRPC enables client and server applications to communicate transparently, and simplifies the building of connected systems.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
gtk-doc (more details)
https://gitlab.gnome.org/GNOME/gtk-doc
Documentation tool for public library API
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
gzip (more details)
https://www.gnu.org/software/gzip
gzip (GNU zip) is a popular data compression program as a replacement for compress
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
h5netcdf (more details)
https://h5netcdf.org
A Python interface for the netCDF4 file-format that reads and writes local or remote HDF5 files directly via h5py or h5pyd, without relying on the Unidata netCDF library.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
h5py (more details)
https://www.h5py.org
HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
hatch-jupyter-builder (more details)
https://hatch-jupyter-builder.readthedocs.io
Hatch Jupyter Builder is a plugin for the hatchling Python build backend. It is primarily targeted for package authors who are providing JavaScript as part of their Python packages. Typical use cases are Jupyter Lab Extensions and Jupyter Widgets.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
hatchling (more details)
https://hatch.pypa.io
Extensible, standards compliant build backend used by Hatch, a modern, extensible Python project manager.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
hic-straw (more details)
https://github.com/aidenlab/straw
Straw is a library which allows rapid streaming of contact data from .hic files.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
hiredis (more details)
https://github.com/redis/hiredis
Hiredis is a minimalistic C client library for the Redis database. It is minimalistic because it just adds minimal support for the protocol, but at the same time it uses a high level printf-alike API in order to make it much higher level than otherwise suggested by its minimal code base and the lack of explicit bindings for every Redis command.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
hunspell (more details)
https://hunspell.github.io
Hunspell is a spell checker and morphological analyzer library and program designed for languages with rich morphology and complex word compounding or character encoding.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
hwloc (more details)
https://www.open-mpi.org/projects/hwloc
The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
hypothesis (more details)
https://github.com/HypothesisWorks/hypothesis
Hypothesis is an advanced testing library for Python. It lets you write tests which are parametrized by a source of examples, and then generates simple and comprehensible examples that make your tests fail. This lets you find more bugs in your code with less work.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
ipympl (more details)
https://matplotlib.org/ipympl
Leveraging the Jupyter interactive widgets framework, ipympl enables the interactive features of matplotlib in the Jupyter notebook and in JupyterLab. Besides, the figure canvas element is a proper Jupyter interactive widget which can be positioned in interactive widget layouts.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
jbigkit (more details)
https://www.cl.cam.ac.uk/~mgk25/jbigkit
JBIG-KIT is a software implementation of the JBIG1 data compression standard (ITU-T T.82), which was designed for bi-level image data, such as scanned documents.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
jedi (more details)
https://github.com/davidhalter/jedi
Jedi - an awesome autocompletion, static analysis and refactoring library for Python.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
jemalloc (more details)
http://jemalloc.net
jemalloc is a general purpose malloc(3) implementation that emphasizes fragmentation avoidance and scalable concurrency support.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
jgmenu (more details)
https://jgmenu.github.io
jgmenu is simple, independent and contemporary-looking X11 menu, designed for scripting, modding and tweaking.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
jq (more details)
https://jqlang.org, https://stedolan.github.io/jq
jq is a lightweight and flexible command-line JSON processor.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
json-c (more details)
https://github.com/json-c/json-c
JSON-C implements a reference counting object model that allows you to easily construct JSON objects in C, output them as JSON formatted strings and parse JSON formatted strings back into the C representation of JSON objects.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
json-fortran (more details)
https://github.com/jacobwilliams/json-fortran
JSON-Fortran: A Modern Fortran JSON API
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
jupyter-server (more details)
https://jupyter.org
The Jupyter Server provides the backend (i.e. the core services, APIs, and REST endpoints) for Jupyter web applications like Jupyter notebook, JupyterLab, and Voila.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
jupyterlmod (more details)
https://github.com/cmd-ntrf/jupyter-lmod
Jupyter interactive notebook server extension that allows users to interact with environment modules before launching kernels. The extension uses Lmod's Python interface to accomplish module-related tasks like loading, unloading, saving collections, etc.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
kim-api (more details)
https://openkim.org
Open Knowledgebase of Interatomic Models. KIM is an API and OpenKIM is a collection of interatomic models (potentials) for atomistic simulations. This is a library that can be used by simulation programs to get access to the models in the OpenKIM database. This EasyBuild only installs the API, the models can be installed with the package openkim-models, or the user can install them manually by running kim-api-collections-management install user MODELNAME or kim-api-collections-management install user OpenKIM to install them all.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
lfoss (more details)
https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain
GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libGLU (more details)
https://mesa.freedesktop.org/archive/glu, https://gitlab.freedesktop.org/mesa/glu
The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libGridXC (more details)
https://gitlab.com/siesta-project/libraries/libgridxc
A library to compute the exchange and correlation energy and potential in spherical (i.e. atoms) or periodic systems.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libPSML (more details)
https://gitlab.com/siesta-project/libraries/libpsml
A library to handle pseudopotentials in PSML format
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libaec (more details)
https://gitlab.dkrz.de/k202009/libaec
Libaec provides fast lossless compression of 1 up to 32 bit wide signed or unsigned integers (samples). The library achieves best results for low entropy data as often encountered in space imaging instrument data or numerical model output from weather or climate simulations. While floating point representations are not directly supported, they can also be efficiently coded by grouping exponents and mantissa.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libaio (more details)
https://pagure.io/libaio
Asynchronous input/output library that uses the kernels native interface.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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libarchive (more details)
https://www.libarchive.org
Multi-format archive and compression library
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
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libavif (more details)
https://github.com/AOMediaCodec/libavif
This library aims to be a friendly, portable C implementation of the AV1 Image File Format, as described here: https://aomediacodec.github.io/av1-avif/
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libcerf (more details)
https://jugit.fz-juelich.de/mlz/libcerf
libcerf is a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functions.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libcint (more details)
https://github.com/sunqm/libcint
libcint is an open source library for analytical Gaussian integrals.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libconfig (more details)
https://hyperrealm.github.io/libconfig
Libconfig is a simple library for processing structured configuration files
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libdap (more details)
https://www.opendap.org/software/libdap
A C++ SDK which contains an implementation of DAP 2.0 and DAP4.0. This includes both Client- and Server-side support classes.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libde265 (more details)
https://github.com/strukturag/libde265
libde265 is an open source implementation of the h.265 video codec
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libdeflate (more details)
https://github.com/ebiggers/libdeflate
Heavily optimized library for DEFLATE/zlib/gzip compression and decompression.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libdrm (more details)
https://dri.freedesktop.org
Direct Rendering Manager runtime library.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libdwarf (more details)
https://www.prevanders.net/dwarf.html
The DWARF Debugging Information Format is of interest to programmers working on compilers and debuggers (and anyone interested in reading or writing DWARF information))
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libedit (more details)
https://thrysoee.dk/editline
This BSD-style licensed command line editor library provides generic line editing, history, and tokenization functions, similar to those found in GNU Readline.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libepoxy (more details)
https://github.com/anholt/libepoxy
Epoxy is a library for handling OpenGL function pointer management for you
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libev (more details)
http://software.schmorp.de/pkg/libev.html
A full-featured and high-performance (see benchmark) event loop that is loosely modelled after libevent, but without its limitations and bugs. It is used in GNU Virtual Private Ethernet, rxvt-unicode, auditd, the Deliantra MORPG Server and Client, and many other programs.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libevent (more details)
https://libevent.org
The libevent API provides a mechanism to execute a callback function when a specific event occurs on a file descriptor or after a timeout has been reached. Furthermore, libevent also support callbacks due to signals or regular timeouts.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libfabric (more details)
https://ofiwg.github.io/libfabric
Libfabric is a core component of OFI. It is the library that defines and exports the user-space API of OFI, and is typically the only software that applications deal with directly. It works in conjunction with provider libraries, which are often integrated directly into libfabric.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libfdf (more details)
https://gitlab.com/siesta-project/libraries/libfdf
LibFDF is the official implementation of the FDF specifications for use in client codes.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libffi (more details)
https://sourceware.org/libffi
The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libgcrypt (more details)
https://gnupg.org/related_software/libgcrypt/index.html
Libgcrypt is a general purpose cryptographic library originally based on code from GnuPG
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libgd (more details)
https://libgd.github.io
GD is an open source code library for the dynamic creation of images by programmers.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libgeotiff (more details)
https://directory.fsf.org/wiki/Libgeotiff
Library for reading and writing coordinate system information from/to GeoTIFF files
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libgit2 (more details)
https://libgit2.org
libgit2 is a portable, pure C implementation of the Git core methods provided as a re-entrant linkable library with a solid API, allowing you to write native speed custom Git applications in any language which supports C bindings.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libglvnd (more details)
https://gitlab.freedesktop.org/glvnd/libglvnd
libglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls between multiple vendors.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libgpg-error (more details)
https://gnupg.org/related_software/libgpg-error/index.html
Libgpg-error is a small library that defines common error values for all GnuPG components.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libheif (more details)
https://github.com/strukturag/libheif
libheif is an HEIF and AVIF file format decoder and encoder
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libiconv (more details)
https://www.gnu.org/software/libiconv
Libiconv converts from one character encoding to another through Unicode conversion
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libidn2 (more details)
http://www.gnu.org/software/libidn2
Libidn2 implements the revised algorithm for internationalized domain names called IDNA2008/TR46.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libjpeg-turbo (more details)
https://libjpeg-turbo.org, https://sourceforge.net/projects/libjpeg-turbo
libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libogg (more details)
https://xiph.org/ogg
Ogg is a multimedia container format, and the native file and stream format for the Xiph.org multimedia codecs.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libopus (more details)
https://www.opus-codec.org
Opus is a totally open, royalty-free, highly versatile audio codec. Opus is unmatched for interactive speech and music transmission over the Internet, but is also intended for storage and streaming applications. It is standardized by the Internet Engineering Task Force (IETF) as RFC 6716 which incorporated technology from Skype’s SILK codec and Xiph.Org’s CELT codec.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libpciaccess (more details)
https://cgit.freedesktop.org/xorg/lib/libpciaccess
Generic PCI access library.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libpng (more details)
https://www.libpng.org/pub/png/libpng.html, http://www.libpng.org/pub/png/libpng.html
libpng is the official PNG reference library
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libpsl (more details)
https://rockdaboot.github.io/libpsl
C library for the Public Suffix List
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
librosa (more details)
https://librosa.org
Audio and music processing in Python
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
librsvg (more details)
https://wiki.gnome.org/Projects/LibRsvg
Librsvg is a library to render SVG files using cairo.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
librttopo (more details)
https://git.osgeo.org/gitea/rttopo/librttopo
The RT Topology Library exposes an API to create and manage standard (ISO 13249 aka SQL/MM) topologies using user-provided data stores.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libsndfile (more details)
http://www.mega-nerd.com/libsndfile
Libsndfile is a C library for reading and writing files containing sampled sound (such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libsodium (more details)
https://doc.libsodium.org
Sodium is a modern, easy-to-use software library for encryption, decryption, signatures, password hashing and more.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libspatialindex (more details)
https://libspatialindex.org
C++ implementation of R*-tree, an MVR-tree and a TPR-tree with C API
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libspatialite (more details)
https://www.gaia-gis.it/fossil/libspatialite/home
SpatiaLite is an open source library intended to extend the SQLite core to support fully fledged Spatial SQL capabilities.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libtasn1 (more details)
https://www.gnu.org/software/libtasn1
Libtasn1 is the ASN.1 library used by GnuTLS, GNU Shishi and some other packages. It was written by Fabio Fiorina, and has been shipped as part of GnuTLS for some time but is now a proper GNU package.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libtirpc (more details)
https://sourceforge.net/projects/libtirpc
Libtirpc is a port of Suns Transport-Independent RPC library to Linux.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libtommath (more details)
https://www.libtom.net/LibTomMath
LibTomMath is a free open source portable number theoretic multiple-precision integer (MPI) library written entirely in C.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libtool (more details)
https://www.gnu.org/software/libtool
GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libunistring (more details)
https://www.gnu.org/software/libunistring
This library provides functions for manipulating Unicode strings and for manipulating C strings according to the Unicode standard.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libunwind (more details)
https://www.nongnu.org/libunwind
The primary goal of libunwind is to define a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto). The API supports both local (same-process) and remote (across-process) operation. As such, the API is useful in a number of applications
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libvorbis (more details)
https://xiph.org/vorbis
Ogg Vorbis is a fully open, non-proprietary, patent-and-royalty-free, general-purpose compressed audio format
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libvori (more details)
https://brehm-research.de/libvori.php
C++ library implementing the Voronoi integration as well as the compressed bqb file format. The present version of libvori is a very early development version, which is hard-coded to work with the CP2k program package.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libwebp (more details)
https://developers.google.com/speed/webp
WebP is a modern image format that provides superior lossless and lossy compression for images on the web. Using WebP, webmasters and web developers can create smaller, richer images that make the web faster.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libwpe (more details)
https://webkit.org/wpe
WPE is the reference WebKit port for embedded and low-consumption computer devices. It has been designed from the ground-up with performance, small footprint, accelerated content rendering, and simplicity of deployment in mind, bringing the excellence of the WebKit engine to countless platforms and target devices.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libxc (more details)
https://www.tddft.org/programs/libxc
Libxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libxml2 (more details)
https://gitlab.gnome.org/GNOME/libxml2/-/wikis, http://xmlsoft.org
Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform).
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libxml2-python (more details)
http://xmlsoft.org
Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform). This is the Python binding.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libxslt (more details)
http://xmlsoft.org, https://gitlab.gnome.org/GNOME/libxslt/-/wikis
Libxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform).
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
libxsmm (more details)
https://github.com/hfp/libxsmm
LIBXSMM is a library for small dense and small sparse matrix-matrix multiplications targeting Intel Architecture (x86).
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntel
Supported GPU families: AMD NVIDIA
-
libyaml (more details)
https://pyyaml.org/wiki/LibYAML
LibYAML is a YAML parser and emitter written in C.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
lit (more details)
https://llvm.org/docs/CommandGuide/lit.html
lit is a portable tool for executing LLVM and Clang style test suites, summarizing their results, and providing indication of failures.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
llvm-compilers (more details)
https://llvm.org
The LLVM Project is a collection of modular and reusable compiler and toolchain technologies.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
LLVM based compiler toolchain, including OpenMPI for MPI support.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
lpsolve (more details)
https://sourceforge.net/projects/lpsolve
Mixed Integer Linear Programming (MILP) solver
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
luaposix (more details)
http://luaposix.github.io/luaposix
A library binding various POSIX APIs. POSIX is the IEEE Portable Operating System Interface standard. luaposix is based on lposix.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
lxml (more details)
https://lxml.de
The lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxslt.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
lz4 (more details)
https://lz4.github.io/lz4
LZ4 is lossless compression algorithm, providing compression speed at 400 MB/s per core. It features an extremely fast decoder, with speed in multiple GB/s per core.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
make (more details)
https://www.gnu.org/software/make/make.html
GNU version of make utility
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
mallard-ducktype (more details)
https://github.com/projectmallard/mallard-ducktype
Parser for the lightweight Ducktype syntax for Mallard
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
matplotlib (more details)
https://matplotlib.org
matplotlib is a python 2D plotting library which produces publication quality figures in a variety of hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python and ipython shell, web application servers, and six graphical user interface toolkits.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
maturin (more details)
https://github.com/pyo3/maturin
This project is meant as a zero configuration replacement for setuptools-rust and milksnake. It supports building wheels for python 3.5+ on windows, linux, mac and freebsd, can upload them to pypi and has basic pypy and graalpy support.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
mctc-lib (more details)
https://grimme-lab.github.io/mctc-lib
Common tool chain for working with molecular structure data in various applications. This library provides a unified way to perform operations on molecular structure data, like reading and writing to common geometry file formats.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
meson-python (more details)
https://github.com/mesonbuild/meson-python
Python build backend (PEP 517) for Meson projects
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
minimap2 (more details)
https://github.com/lh3/minimap2
Minimap2 is a fast sequence mapping and alignment program that can find overlaps between long noisy reads, or map long reads or their assemblies to a reference genome optionally with detailed alignment (i.e. CIGAR). At present, it works efficiently with query sequences from a few kilobases to ~100 megabases in length at an error rate ~15%. Minimap2 outputs in the PAF or the SAM format. On limited test data sets, minimap2 is over 20 times faster than most other long-read aligners. It will replace BWA-MEM for long reads and contig alignment.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
minizip (more details)
https://www.winimage.com/zLibDll/minizip.html
Mini zip and unzip based on zlib
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
ml_dtypes (more details)
https://github.com/jax-ml/ml_dtypes
ml_dtypes is a stand-alone implementation of several NumPy dtype extensions used in machine learning libraries, including: bfloat16: an alternative to the standard float16 format float8_*: several experimental 8-bit floating point representations including: float8_e4m3b11fnuz float8_e4m3fn float8_e4m3fnuz float8_e5m2 float8_e5m2fnuz
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
mpi4py (more details)
https://github.com/mpi4py/mpi4py
MPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
mpl-ascii (more details)
https://github.com/chriscave/mpl_ascii
A matplotlib backend that produces plots using only ASCII characters
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
mstore (more details)
https://github.com/grimme-lab/mstore
Molecular structure store for testing
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
multicharge (more details)
https://github.com/grimme-lab/multicharge
Electronegativity equilibration model for atomic partial charges.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
multiprocess (more details)
https://github.com/uqfoundation/multiprocess
better multiprocessing and multithreading in python
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
ncbi-vdb (more details)
https://github.com/ncbi/ncbi-vdb
The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
ncdu (more details)
https://dev.yorhel.nl/ncdu
Ncdu is a disk usage analyzer with an ncurses interface. It is designed to find space hogs on a remote server where you don't have an entire graphical setup available, but it is a useful tool even on regular desktop systems. Ncdu aims to be fast, simple and easy to use, and should be able to run in any minimal POSIX-like environment with ncurses installed.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
neko (more details)
https://neko.cfd
Neko is a portable framework for high-order spectral element flow simulations.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
netCDF (more details)
https://www.unidata.ucar.edu/software/netcdf
NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
netCDF-C++4 (more details)
https://www.unidata.ucar.edu/software/netcdf
NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
netCDF-Fortran (more details)
https://www.unidata.ucar.edu/software/netcdf
NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
netcdf4-python (more details)
https://unidata.github.io/netcdf4-python
Python/numpy interface to netCDF.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
nettle (more details)
https://www.lysator.liu.se/~nisse/nettle
Nettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
networkx (more details)
https://pypi.python.org/pypi/networkx
NetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
nghttp2 (more details)
https://github.com/nghttp2/nghttp2
This is an implementation of the Hypertext Transfer Protocol version 2 in C. The framing layer of HTTP/2 is implemented as a reusable C library. On top of that, we have implemented an HTTP/2 client, server and proxy. We have also developed load test and benchmarking tools for HTTP/2. An HPACK encoder and decoder are available as a public API.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
nghttp3 (more details)
https://github.com/ngtcp2/nghttp3
nghttp3 is an implementation of RFC 9114 HTTP/3 mapping over QUIC and RFC 9204 QPACK in C. It does not depend on any particular QUIC transport implementation.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
ngtcp2 (more details)
https://github.com/ngtcp2/ngtcp2
'Call it TCP/2. One More Time.' ngtcp2 project is an effort to implement RFC9000 QUIC protocol.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
nlohmann_json (more details)
https://github.com/nlohmann/json
JSON for Modern C++
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
nodejs (more details)
https://nodejs.org
Node.js is a platform built on Chrome's JavaScript runtime for easily building fast, scalable network applications. Node.js uses an event-driven, non-blocking I/O model that makes it lightweight and efficient, perfect for data-intensive real-time applications that run across distributed devices.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
nsync (more details)
https://github.com/google/nsync
nsync is a C library that exports various synchronization primitives, such as mutexes
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
numactl (more details)
https://github.com/numactl/numactl
The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
numba (more details)
https://numba.pydata.org
Numba is an Open Source NumPy-aware optimizing compiler for Python sponsored by Continuum Analytics, Inc. It uses the remarkable LLVM compiler infrastructure to compile Python syntax to machine code.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
occt (more details)
https://www.opencascade.com
Open CASCADE Technology (OCCT) is an object-oriented C++ class library designed for rapid production of sophisticated domain-specific CAD/CAM/CAE applications.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
ollama (more details)
https://ollama.com
Get up and running with large language models.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
openCARP (more details)
https://opencarp.org
openCARP is an open cardiac electrophysiology simulator for in-silico experiments.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
optree (more details)
https://optree.readthedocs.io/en/latest
Optimized PyTree Utilities
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
orjson (more details)
https://github.com/ijl/orjson
Fast, correct Python JSON library supporting dataclasses, datetimes, and numpy.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
p11-kit (more details)
https://p11-glue.freedesktop.org/p11-kit.html
Provides a way to load and enumerate PKCS#11 modules. Provides a standard configuration setup for installing PKCS#11 modules in such a way that they're discoverable. Also solves problems with coordinating the use of PKCS#11 by different components or libraries living in the same process.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
p7zip (more details)
https://github.com/p7zip-project/p7zip
p7zip is a quick port of 7z.exe and 7za.exe (CLI version of 7zip) for Unix. 7-Zip is a file archiver with highest compression ratio.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
parallel (more details)
https://savannah.gnu.org/projects/parallel
parallel: Build and execute shell commands in parallel
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
parameterized (more details)
https://github.com/wolever/parameterized
Parameterized testing with any Python test framework
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
paramiko (more details)
https://paramiko.org
Paramiko is a pure-Python (3.6+) implementation of the SSHv2 protocol, providing both client and server functionality. It provides the foundation for the high-level SSH library Fabric, which is what we recommend you use for common client use-cases such as running remote shell commands or transferring files.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
patchelf (more details)
https://github.com/NixOS/patchelf
PatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
picom (more details)
https://github.com/yshui/picom
A lightweight compositor for X11, successor to compton, offering shadows, transparency, and vsync.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
pigz (more details)
https://zlib.net/pigz
pigz, which stands for parallel implementation of gzip, is a fully functional replacement for gzip that exploits multiple processors and multiple cores to the hilt when compressing data. pigz was written by Mark Adler, and uses the zlib and pthread libraries.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
pixman (more details)
http://www.pixman.org
Pixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
pkg-config (more details)
https://www.freedesktop.org/wiki/Software/pkg-config
pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the correct compiler options on the command line so an application can use gcc -o test test.c
Available in EESSI versions: 2023.06pkg-config --libs --cflags glib-2.0for instance, rather than hard-coding values on where to find glib (or other libraries).
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
pkgconf (more details)
https://github.com/pkgconf/pkgconf
pkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
pkgconfig (more details)
https://github.com/matze/pkgconfig
pkgconfig is a Python module to interface with the pkg-config command line tool
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
plotly.py (more details)
https://plot.ly/python
An open-source, interactive graphing library for Python
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
plumpy (more details)
https://python.org
Bundle of Python packages required to run plumpy: A python workflows library that supports writing Processes with a well defined set of inputs and outputs that can be strung together.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
poetry (more details)
https://python-poetry.org
Python packaging and dependency management made easy. Poetry helps you declare, manage and install dependencies of Python projects, ensuring you have the right stack everywhere.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
pre-commit (more details)
https://pre-commit.com
A framework for managing and maintaining multi-language pre-commit hooks. Git hook scripts are useful for identifying simple issues before submission to code review. We run our hooks on every commit to automatically point out issues in code such as missing semicolons, trailing whitespace, and debug statements. By pointing these issues out before code review, this allows a code reviewer to focus on the architecture of a change while not wasting time with trivial style nitpicks.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
protobuf (more details)
https://github.com/protocolbuffers/protobuf
Protocol Buffers (a.k.a., protobuf) are Google's language-neutral, platform-neutral, extensible mechanism for serializing structured data.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
protobuf-python (more details)
https://github.com/google/protobuf
Python Protocol Buffers runtime library.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
psutil (more details)
https://github.com/giampaolo/psutil
A cross-platform process and system utilities module for Python
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
psycopg (more details)
https://psycopg.org
Psycopg is the most popular PostgreSQL adapter for the Python programming language.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
psycopg2 (more details)
https://psycopg.org
Psycopg is the most popular PostgreSQL adapter for the Python programming language.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
pugixml (more details)
https://pugixml.org
pugixml is a light-weight C++ XML processing library
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
py-cpuinfo (more details)
https://github.com/workhorsy/py-cpuinfo
py-cpuinfo gets CPU info with pure Python.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
pyMBE: the Python-based Molecule Builder for ESPResSo pyMBE provides tools to facilitate building up molecules with complex architectures in the Molecular Dynamics software ESPResSo.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
pybind11 (more details)
https://pybind11.readthedocs.io
pybind11 is a lightweight header-only library that exposes C++ types in Python and vice versa, mainly to create Python bindings of existing C++ code.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
pydantic (more details)
https://github.com/samuelcolvin/pydantic
Data validation and settings management using Python type hinting.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
pydot (more details)
https://github.com/pydot/pydot
Python interface to Graphviz's Dot language.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
pyfaidx (more details)
https://pypi.python.org/pypi/pyfaidx
pyfaidx: efficient pythonic random access to fasta subsequences
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
pymatgen (more details)
https://pymatgen.org
Python Materials Genomics is a robust materials analysis code that defines core object representations for structures and molecules with support for many electronic structure codes.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
pyproj (more details)
https://pyproj4.github.io/pyproj
Python interface to PROJ4 library for cartographic transformations
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
pystencils (more details)
https://pycodegen.pages.i10git.cs.fau.de/pystencils
pystencils uses sympy to define stencil operations, that can be executed on numpy arrays
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
pytest (more details)
https://docs.pytest.org/en/latest
The pytest framework makes it easy to write small, readable tests, and can scale to support complex functional testing for applications and libraries.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
pytest-flakefinder (more details)
https://github.com/dropbox/pytest-flakefinder
Runs tests multiple times to expose flakiness.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
pytest-rerunfailures (more details)
https://github.com/pytest-dev/pytest-rerunfailures
pytest plugin to re-run tests to eliminate flaky failures.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
pytest-shard (more details)
https://github.com/AdamGleave/pytest-shard
pytest plugin to support parallelism across multiple machines. Shards tests based on a hash of their test name enabling easy parallelism across machines, suitable for a wide variety of continuous integration services. Tests are split at the finest level of granularity, individual test cases, enabling parallelism even if all of your tests are in a single file (or even single parameterized test method).
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
pytest-subtests (more details)
https://github.com/pytest-dev/pytest-subtests
unittest subTest() support and subtests fixture.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
python-casacore (more details)
https://casacore.github.io/python-casacore/#
Python-casacore is a set of Python bindings for casacore, a c++ library used in radio astronomy. Python-casacore replaces the old pyrap.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
python-isal (more details)
https://github.com/pycompression/python-isal
Faster zlib and gzip compatible compression and decompression by providing python bindings for the isa-l library.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
python-xxhash (more details)
https://github.com/ifduyue/python-xxhash
xxhash is a Python binding for the xxHash library by Yann Collet.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
pyzstd (more details)
https://github.com/Rogdham/pyzstd
Pyzstd module provides classes and functions for compressing and decompressing data, using Facebook's Zstandard (or zstd as short name) algorithm. The API style is similar to Python's bz2/lzma/zlib modules.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
qrupdate (more details)
https://sourceforge.net/projects/qrupdate
qrupdate is a Fortran library for fast updates of QR and Cholesky decompositions.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
re2c (more details)
https://re2c.org
re2c is a free and open-source lexer generator for C and C++. Its main goal is generating fast lexers: at least as fast as their reasonably optimized hand-coded counterparts. Instead of using traditional table-driven approach, re2c encodes the generated finite state automata directly in the form of conditional jumps and comparisons.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
redis-py (more details)
https://github.com/redis/redis-py
The Python interface to the Redis key-value store.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
rpy2 (more details)
https://rpy2.github.io
rpy2 is an interface to R running embedded in a Python process.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
ruamel.yaml (more details)
https://sourceforge.net/projects/ruamel-yaml
ruamel.yaml is a YAML 1.2 loader/dumper package for Python.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
scCODA (more details)
https://github.com/theislab/scCODA
scCODA allows for identification of compositional changes in high-throughput sequencing count data, especially cell compositions from scRNA-seq.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
scanpy (more details)
https://scanpy.readthedocs.io/en/stable
Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, trajectory inference and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
scikit-bio (more details)
http://scikit-bio.org
scikit-bio is an open-source, BSD-licensed Python 3 package providing data structures, algorithms and educational resources for bioinformatics.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
scikit-build (more details)
https://scikit-build.readthedocs.io/en/latest
Scikit-Build, or skbuild, is an improved build system generator for CPython C/C++/Fortran/Cython extensions.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
scikit-build-core (more details)
https://scikit-build.readthedocs.io/en/latest
Scikit-build-core is a complete ground-up rewrite of scikit-build on top of modern packaging APIs. It provides a bridge between CMake and the Python build system, allowing you to make Python modules with CMake.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
scikit-learn (more details)
https://scikit-learn.org/stable/index.html
Scikit-learn integrates machine learning algorithms in the tightly-knit scientific Python world, building upon numpy, scipy, and matplotlib. As a machine-learning module, it provides versatile tools for data mining and analysis in any field of science and engineering. It strives to be simple and efficient, accessible to everybody, and reusable in various contexts.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
setuptools (more details)
https://pypi.org/project/setuptools
Easily download, build, install, upgrade, and uninstall Python packages
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
setuptools-rust (more details)
https://github.com/PyO3/setuptools-rust
setuptools-rust is a plugin for setuptools to build Rust Python extensions implemented with PyO3 or rust-cpython.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
siscone (more details)
https://siscone.hepforge.org
Hadron Seedless Infrared-Safe Cone jet algorithm
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
snakemake (more details)
https://snakemake.readthedocs.io
The Snakemake workflow management system is a tool to create reproducible and scalable data analyses.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
snappy (more details)
https://github.com/google/snappy
Snappy is a compression/decompression library. It does not aim for maximum compression, or compatibility with any other compression library; instead, it aims for very high speeds and reasonable compression.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
spglib-python (more details)
https://pypi.python.org/pypi/spglib
Spglib for Python. Spglib is a library for finding and handling crystal symmetries written in C.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
spin (more details)
https://github.com/scientific-python/spin
Developer tool for scientific Python libraries
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
statsmodels (more details)
https://www.statsmodels.org
Statsmodels is a Python module that allows users to explore data, estimate statistical models, and perform statistical tests.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
sympy (more details)
https://sympy.org
SymPy is a Python library for symbolic mathematics. It aims to become a full-featured computer algebra system (CAS) while keeping the code as simple as possible in order to be comprehensible and easily extensible. SymPy is written entirely in Python and does not require any external libraries.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
tbb (more details)
https://github.com/oneapi-src/oneTBB
Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
tblite (more details)
https://github.com/tblite/tblite
Light-weight tight-binding framework
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
tcsh (more details)
https://www.tcsh.org
Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). It is a command language interpreter usable both as an interactive login shell and a shell script command processor. It includes a command-line editor, programmable word completion, spelling correction, a history mechanism, job control and a C-like syntax.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
tensorboard (more details)
https://github.com/tensorflow/tensorboard
TensorBoard is a suite of web applications for inspecting and understanding your TensorFlow runs and graphs.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
tensorflow-probability (more details)
https://www.tensorflow.org/probability
TensorFlow Probability (TFP) is a library for probabilistic reasoning and statistical analysis.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
test-drive (more details)
https://github.com/fortran-lang/test-drive
This project offers a lightweight, procedural unit testing framework based on nothing but standard Fortran.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
time (more details)
https://www.gnu.org/software/time
The `time' command runs another program, then displays information about the resources used by that program, collected by the system while the program was running.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
tint2 (more details)
https://gitlab.com/o9000/tint2
A lightweight panel/taskbar for Linux desktops.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
tlparse (more details)
https://github.com/ezyang/tlparse
Parse structured PT2 (PyTorch 2) logs
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
tmux (more details)
https://github.com/tmux/tmux
tmux is a terminal multiplexer: it enables a number of terminals to be created, accessed, and controlled from a single screen. tmux may be detached from a screen and continue running in the background, then later reattached.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
toil-cwl (more details)
https://github.com/DataBiosphere/toil
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python. This installation contains toil, with the cwl extras.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
tornado (more details)
https://github.com/tornadoweb/tornado
Tornado is a Python web framework and asynchronous networking library.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
tqdm (more details)
https://github.com/tqdm/tqdm
A fast, extensible progress bar for Python and CLI
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
typing-extensions (more details)
https://github.com/python/typing_extensions, https://github.com/python/typing/blob/master/typing_extensions/README.rst
Typing Extensions - Backported and Experimental Type Hints for Python
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
umap-learn (more details)
https://umap-learn.readthedocs.io/en/latest
Uniform Manifold Approximation and Projection (UMAP) is a dimension reduction technique that can be used for visualisation similarly to t-SNE, but also for general non-linear dimension reduction.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
uncertainties (more details)
http://uncertainties-python-package.readthedocs.io
Transparent calculations with uncertainties on the quantities involved (aka error propagation); fast calculation of derivatives
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
unifdef (more details)
https://github.com/fanf2/unifdef
unifdef - selectively remove C preprocessor conditionals The unifdef utility selectively processes conditional C preprocessor and the additional text that they delimit, while otherwise leaving the file alone.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
unittest-xml-reporting (more details)
http://github.com/xmlrunner/unittest-xml-reporting
A unittest test runner that can save test results to XML files in xUnit format. The files can be consumed by a wide range of tools, such as build systems, IDEs and continuous integration servers.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
unixODBC (more details)
https://www.unixodbc.org
unixODBC provides a uniform interface between application and database driver
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
utf8proc (more details)
https://github.com/JuliaStrings/utf8proc
utf8proc is a small, clean C library that provides Unicode normalization, case-folding, and other operations for data in the UTF-8 encoding.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
uthash (more details)
https://troydhanson.github.io/uthash
Austin is a Python frame stack sampler for CPython written in pure C.
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
virtualenv (more details)
https://github.com/pypa/virtualenv
A tool for creating isolated virtual python environments.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
waLBerla (more details)
https://walberla.net/index.html
Widely applicable Lattics-Boltzmann from Erlangen is a block-structured high-performance framework for multiphysics simulations
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
websockify (more details)
https://github.com/novnc/websockify
WebSockets support for any application/server
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
wget (more details)
https://www.gnu.org/software/wget
GNU Wget is a free software package for retrieving files using HTTP, HTTPS and FTP, the most widely-used Internet protocols. It is a non-interactive commandline tool, so it may easily be called from scripts, cron jobs, terminals without X-Windows support, etc.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
wpebackend-fdo (more details)
https://wpewebkit.org
WPE WebKit allows embedders to create simple and performant systems based on Web platform technologies. It is a WebKit port designed with flexibility and hardware acceleration in mind, leveraging common 3D graphics APIs for best performance.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
wradlib (more details)
https://docs.wradlib.org
The wradlib project has been initiated in order to facilitate the use of weather radar data as well as to provide a common platform for research on new algorithms.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
wrapt (more details)
https://pypi.org/project/wrapt
The aim of the wrapt module is to provide a transparent object proxy for Python, which can be used as the basis for the construction of function wrappers and decorator functions.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
wxPython (more details)
https://www.wxpython.org
Wraps the wxWidgets C++ toolkit and provides access to the user interface portions of the wxWidgets API, enabling Python applications to have a native GUI on Windows, Macs or Unix systems, with a native look and feel and requiring very little (if any) platform specific code.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
wxWidgets (more details)
https://www.wxwidgets.org
wxWidgets is a C++ library that lets developers create applications for Windows, Mac OS X, Linux and other platforms with a single code base. It has popular language bindings for Python, Perl, Ruby and many other languages, and unlike other cross-platform toolkits, wxWidgets gives applications a truly native look and feel because it uses the platform's native API rather than emulating the GUI.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
x264 (more details)
https://www.videolan.org/developers/x264.html
x264 is a free software library and application for encoding video streams into the H.264/MPEG-4 AVC compression format, and is released under the terms of the GNU GPL.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
x265 (more details)
https://x265.org
x265 is a free software library and application for encoding video streams into the H.265 AVC compression format, and is released under the terms of the GNU GPL.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
xESMF (more details)
https://xesmf.readthedocs.io
xESMF: Universal Regridder for Geospatial Data
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
xarray (more details)
https://github.com/pydata/xarray
xarray (formerly xray) is an open source project and Python package that aims to bring the labeled data power of pandas to the physical sciences, by providing N-dimensional variants of the core pandas data structures.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
xmlf90 (more details)
https://gitlab.com/siesta-project/libraries/xmlf90
A fast XML parser and generator in Fortran
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
xorg-macros (more details)
https://cgit.freedesktop.org/xorg/util/macros, https://gitlab.freedesktop.org/xorg/util/macros
X.org macros utilities.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
xprop (more details)
https://www.x.org/wiki
The xprop utility is for displaying window and font properties in an X server. One window or font is selected using the command line arguments or possibly in the case of a window, by clicking on the desired window. A list of properties is then given, possibly with formatting information.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
xterm (more details)
https://xterm.dev
X11 terminal emulator for the X Window System
Available in EESSI versions: 2025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
xxHash (more details)
https://cyan4973.github.io/xxHash
xxHash is an extremely fast non-cryptographic hash algorithm, working at RAM speed limit.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
xxd (more details)
https://www.vim.org
xxd is part of the VIM package and this will only install xxd, not vim! xxd converts to/from hexdumps of binary files.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
yacrd (more details)
https://github.com/natir/yacrd
Yet Another Chimeric Read Detector.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
yaml-cpp (more details)
https://github.com/jbeder/yaml-cpp
yaml-cpp is a YAML parser and emitter in C++ matching the YAML 1.2 spec
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
yell (more details)
https://github.com/rudionrails/yell
Yell - Your Extensible Logging Library is a comprehensive logging replacement for Ruby.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
yelp-tools (more details)
https://gitlab.gnome.org/GNOME/yelp-tools
yelp-tools is a collection of scripts and build utilities to help create, manage, and publish documentation for Yelp and the web. Most of the heavy lifting is done by packages like yelp-xsl and itstool. This package just wraps things up in a developer-friendly way.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
yelp-xsl (more details)
https://gitlab.gnome.org/GNOME/yelp-xslg
yelp-xsl is a collection of programs and data files to help you build, maintain, and distribute documentation. It provides XSLT stylesheets that can be built upon for help viewers and publishing systems. These stylesheets output JavaScript and CSS content, and reference images provided by yelp-xsl. This package also redistributes copies of the jQuery and jQuery.Syntax JavaScript libraries.
Available in EESSI versions: 2023.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
zstd (more details)
https://facebook.github.io/zstd
Zstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression/speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set.
Available in EESSI versions: 2023.062025.06
Supported CPU families: AMDIntelArm
Supported GPU families: AMD NVIDIA
-
pytest-mock (extension)
Python package included as extension to the following software installations:
- astropy-testing
- ASE
ase (extension)
Python package included as extension to the following
software installations:
ase-ext (extension)
Python package included as extension to the following
software installations:
pytest_mock (extension)
Python package included as extension to the following
software installations:
pyarrow (extension)
Python package included as extension to the following
software installations:
xarray-einstats (extension)
Python package included as extension to the following
software installations:
ArviZ (extension)
Python package included as extension to the following
software installations:
soupsieve (extension)
Python package included as extension to the following
software installations:
BeautifulSoup (extension)
Python package included as extension to the following
software installations:
XML::Writer (extension)
Perl module included as extension to the following
software installations:
BioPerl (extension)
Perl module included as extension to the following
software installations:
Bio::Procedural (extension)
Perl module included as extension to the following
software installations:
OWSLib (extension)
Python package included as extension to the following
software installations:
pyepsg (extension)
Python package included as extension to the following
software installations:
pykdtree (extension)
Python package included as extension to the following
software installations:
pyshp (extension)
Python package included as extension to the following
software installations:
Cartopy (extension)
Python package included as extension to the following
software installations:
deprecation (extension)
Python package included as extension to the following
software installations:
jupyter_packaging (extension)
Python package included as extension to the following
software installations:
jupyter_client (extension)
Python package included as extension to the following
software installations:
widgetsnbextension (extension)
Python package included as extension to the following
software installations:
jupyterlab_widgets (extension)
Python package included as extension to the following
software installations:
comm (extension)
Python package included as extension to the following
software installations:
fastjsonschema (extension)
Python package included as extension to the following
software installations:
ipywidgets (extension)
Python package included as extension to the following
software installations:
bleach (extension)
Python package included as extension to the following
software installations:
defusedxml (extension)
Python package included as extension to the following
software installations:
jupyter_core (extension)
Python package included as extension to the following
software installations:
jupyterlab_pygments (extension)
Python package included as extension to the following
software installations:
mistune (extension)
Python package included as extension to the following
software installations:
nbclient (extension)
Python package included as extension to the following
software installations:
pandocfilters (extension)
Python package included as extension to the following
software installations:
tinycss2 (extension)
Python package included as extension to the following
software installations:
traitlets (extension)
Python package included as extension to the following
software installations:
shortuuid (extension)
Python package included as extension to the following
software installations:
ngs-tools (extension)
Python package included as extension to the following
software installations:
nbformat (extension)
Python package included as extension to the following
software installations:
nbconvert (extension)
Python package included as extension to the following
software installations:
itolapi (extension)
Python package included as extension to the following
software installations:
hits (extension)
Python package included as extension to the following
software installations:
Levenshtein (extension)
Python package included as extension to the following
software installations:
python-Levenshtein (extension)
Python package included as extension to the following
software installations:
Cassiopeia (extension)
Python package included as extension to the following
software installations:
esmpy (extension)
Python package included as extension to the following
software installations:
cligj (extension)
Python package included as extension to the following
software installations:
click-plugins (extension)
Python package included as extension to the following
software installations:
munch (extension)
Python package included as extension to the following
software installations:
fiona (extension)
Python package included as extension to the following
software installations:
itsdangerous (extension)
Python package included as extension to the following
software installations:
Werkzeug (extension)
Python package included as extension to the following
software installations:
asgiref (extension)
Python package included as extension to the following
software installations:
Flask (extension)
Python package included as extension to the following
software installations:
Flask-Cors (extension)
Python package included as extension to the following
software installations:
cachelib (extension)
Python package included as extension to the following
software installations:
Flask-Session (extension)
Python package included as extension to the following
software installations:
werkzeug (extension)
Python package included as extension to the following
software installations:
blinker (extension)
Python package included as extension to the following
software installations:
flask (extension)
Python package included as extension to the following
software installations:
msgspec (extension)
Python package included as extension to the following
software installations:
FlexiBLAS (extension)
included as extension to the following
software installations:
LAPACK (extension)
included as extension to the following
software installations:
flux-core (extension)
included as extension to the following
software installations:
flux-sched (extension)
included as extension to the following
software installations:
flux-pmix (extension)
included as extension to the following
software installations:
gmxapi (extension)
Python package included as extension to the following
software installations:
GTK+ (extension)
included as extension to the following
software installations:
hicolor-icon-theme (extension)
included as extension to the following
software installations:
adwaita-icon-theme (extension)
included as extension to the following
software installations:
GTK (extension)
included as extension to the following
software installations:
smmap (extension)
Python package included as extension to the following
software installations:
gitdb (extension)
Python package included as extension to the following
software installations:
GitPython (extension)
Python package included as extension to the following
software installations:
pure_eval (extension)
Python package included as extension to the following
software installations:
executing (extension)
Python package included as extension to the following
software installations:
asttokens (extension)
Python package included as extension to the following
software installations:
stack_data (extension)
Python package included as extension to the following
software installations:
prompt_toolkit (extension)
Python package included as extension to the following
software installations:
pickleshare (extension)
Python package included as extension to the following
software installations:
matplotlib-inline (extension)
Python package included as extension to the following
software installations:
parso (extension)
Python package included as extension to the following
software installations:
jedi (extension)
Python package included as extension to the following
software installations:
backcall (extension)
Python package included as extension to the following
software installations:
ipython (extension)
Python package included as extension to the following
software installations:
matplotlib_inline (extension)
Python package included as extension to the following
software installations:
ipython_pygments_lexers (extension)
Python package included as extension to the following
software installations:
json5 (extension)
Python package included as extension to the following
software installations:
jupyterlab_server (extension)
Python package included as extension to the following
software installations:
jupyter-lsp (extension)
Python package included as extension to the following
software installations:
async-lru (extension)
Python package included as extension to the following
software installations:
jupyterlab (extension)
Python package included as extension to the following
software installations:
h11 (extension)
Python package included as extension to the following
software installations:
httpcore (extension)
Python package included as extension to the following
software installations:
httpx (extension)
Python package included as extension to the following
software installations:
pyregion (extension)
Python package included as extension to the following
software installations:
backports.shutil_get_terminal_size (extension)
Python package included as extension to the following
software installations:
bdsf (extension)
Python package included as extension to the following
software installations:
LINC (extension)
Python package included as extension to the following
software installations:
lpc3d (extension)
Python package included as extension to the following
software installations:
tabulate (extension)
Python package included as extension to the following
software installations:
LRBinner (extension)
Python package included as extension to the following
software installations:
lsmtool (extension)
Python package included as extension to the following
software installations:
lightgbm (extension)
Python package included as extension to the following
software installations:
configparser (extension)
Python package included as extension to the following
software installations:
LoSoTo (extension)
Python package included as extension to the following
software installations:
MAFFT (extension)
included as extension to the following
software installations:
MAFFT Extensions (extension)
included as extension to the following
software installations:
mrcfile (extension)
Python package included as extension to the following
software installations:
GridDataFormats (extension)
Python package included as extension to the following
software installations:
gsd (extension)
Python package included as extension to the following
software installations:
msgpack (extension)
Python package included as extension to the following
software installations:
mmtf-python (extension)
Python package included as extension to the following
software installations:
funcsigs (extension)
Python package included as extension to the following
software installations:
fasteners (extension)
Python package included as extension to the following
software installations:
MDAnalysis (extension)
Python package included as extension to the following
software installations:
docker (extension)
Python package included as extension to the following
software installations:
entrypoints (extension)
Python package included as extension to the following
software installations:
gunicorn (extension)
Python package included as extension to the following
software installations:
Markdown (extension)
Python package included as extension to the following
software installations:
querystring_parser (extension)
Python package included as extension to the following
software installations:
sqlparse (extension)
Python package included as extension to the following
software installations:
mlflow (extension)
Python package included as extension to the following
software installations:
pyasn1-modules (extension)
Python package included as extension to the following
software installations:
rsa (extension)
Python package included as extension to the following
software installations:
google-auth (extension)
Python package included as extension to the following
software installations:
opentelemetry_semantic_conventions (extension)
Python package included as extension to the following
software installations:
opentelemetry_sdk (extension)
Python package included as extension to the following
software installations:
opentelemetry_api (extension)
Python package included as extension to the following
software installations:
databricks_sdk (extension)
Python package included as extension to the following
software installations:
cachetools (extension)
Python package included as extension to the following
software installations:
graphql-relay (extension)
Python package included as extension to the following
software installations:
graphql_core (extension)
Python package included as extension to the following
software installations:
graphene (extension)
Python package included as extension to the following
software installations:
alembic (extension)
Python package included as extension to the following
software installations:
mlflow_skinny (extension)
Python package included as extension to the following
software installations:
sniffio (extension)
Python package included as extension to the following
software installations:
anyio (extension)
Python package included as extension to the following
software installations:
starlette (extension)
Python package included as extension to the following
software installations:
annotated_doc (extension)
Python package included as extension to the following
software installations:
fastapi (extension)
Python package included as extension to the following
software installations:
graphql_relay (extension)
Python package included as extension to the following
software installations:
uvicorn (extension)
Python package included as extension to the following
software installations:
MarkupSafe (extension)
Python package included as extension to the following
software installations:
Mako (extension)
Python package included as extension to the following
software installations:
MarkUpSafe (extension)
Python package included as extension to the following
software installations:
colormath (extension)
Python package included as extension to the following
software installations:
spectra (extension)
Python package included as extension to the following
software installations:
lzstring (extension)
Python package included as extension to the following
software installations:
coloredlogs (extension)
Python package included as extension to the following
software installations:
mdurl (extension)
Python package included as extension to the following
software installations:
markdown-it-py (extension)
Python package included as extension to the following
software installations:
Pygments (extension)
Python package included as extension to the following
software installations:
rich (extension)
Python package included as extension to the following
software installations:
commonmark (extension)
Python package included as extension to the following
software installations:
humanfriendly (extension)
Python package included as extension to the following
software installations:
rich-click (extension)
Python package included as extension to the following
software installations:
multiqc (extension)
Python package included as extension to the following
software installations:
regex (extension)
Python package included as extension to the following
software installations:
python-crfsuite (extension)
Python package included as extension to the following
software installations:
NLTK (extension)
Python package included as extension to the following
software installations:
general (extension)
included as extension to the following
software installations:
io (extension)
included as extension to the following
software installations:
statistics (extension)
included as extension to the following
software installations:
struct (extension)
included as extension to the following
software installations:
optim (extension)
included as extension to the following
software installations:
OpenSSL (extension)
included as extension to the following
software installations:
Config::General (extension)
Perl module included as extension to the following
software installations:
File::Listing (extension)
Perl module included as extension to the following
software installations:
ExtUtils::InstallPaths (extension)
Perl module included as extension to the following
software installations:
ExtUtils::Helpers (extension)
Perl module included as extension to the following
software installations:
Test::Harness (extension)
Perl module included as extension to the following
software installations:
ExtUtils::Config (extension)
Perl module included as extension to the following
software installations:
Module::Build::Tiny (extension)
Perl module included as extension to the following
software installations:
aliased (extension)
Perl module included as extension to the following
software installations:
Text::Glob (extension)
Perl module included as extension to the following
software installations:
Regexp::Common (extension)
Perl module included as extension to the following
software installations:
GO::Utils (extension)
Perl module included as extension to the following
software installations:
Module::Pluggable (extension)
Perl module included as extension to the following
software installations:
Test::Fatal (extension)
Perl module included as extension to the following
software installations:
Test::Warnings (extension)
Perl module included as extension to the following
software installations:
File::ShareDir (extension)
Perl module included as extension to the following
software installations:
File::ShareDir::Install (extension)
Perl module included as extension to the following
software installations:
IPC::System::Simple (extension)
Perl module included as extension to the following
software installations:
Importer (extension)
Perl module included as extension to the following
software installations:
Term::Table (extension)
Perl module included as extension to the following
software installations:
Scope::Guard (extension)
Perl module included as extension to the following
software installations:
Sub::Info (extension)
Perl module included as extension to the following
software installations:
Test2::Require::Module (extension)
Perl module included as extension to the following
software installations:
Test2::Plugin::NoWarnings (extension)
Perl module included as extension to the following
software installations:
Class::Tiny (extension)
Perl module included as extension to the following
software installations:
Test::File::ShareDir::Dist (extension)
Perl module included as extension to the following
software installations:
DateTime::Locale (extension)
Perl module included as extension to the following
software installations:
DateTime::TimeZone (extension)
Perl module included as extension to the following
software installations:
Test::Requires (extension)
Perl module included as extension to the following
software installations:
Module::Implementation (extension)
Perl module included as extension to the following
software installations:
Module::Build (extension)
Perl module included as extension to the following
software installations:
Module::Runtime (extension)
Perl module included as extension to the following
software installations:
Try::Tiny (extension)
Perl module included as extension to the following
software installations:
Params::Validate (extension)
Perl module included as extension to the following
software installations:
List::MoreUtils (extension)
Perl module included as extension to the following
software installations:
Exporter::Tiny (extension)
Perl module included as extension to the following
software installations:
Class::Singleton (extension)
Perl module included as extension to the following
software installations:
CPAN::Meta::Check (extension)
Perl module included as extension to the following
software installations:
Test::Without::Module (extension)
Perl module included as extension to the following
software installations:
DateTime (extension)
Perl module included as extension to the following
software installations:
File::Find::Rule::Perl (extension)
Perl module included as extension to the following
software installations:
Readonly (extension)
Perl module included as extension to the following
software installations:
Git (extension)
Perl module included as extension to the following
software installations:
Tree::DAG_Node (extension)
Perl module included as extension to the following
software installations:
Template (extension)
Perl module included as extension to the following
software installations:
DBI (extension)
Perl module included as extension to the following
software installations:
DBD::SQLite (extension)
Perl module included as extension to the following
software installations:
Math::Bezier (extension)
Perl module included as extension to the following
software installations:
Archive::Extract (extension)
Perl module included as extension to the following
software installations:
DBIx::Simple (extension)
Perl module included as extension to the following
software installations:
Shell (extension)
Perl module included as extension to the following
software installations:
File::Spec (extension)
Perl module included as extension to the following
software installations:
Test::Simple (extension)
Perl module included as extension to the following
software installations:
Set::Scalar (extension)
Perl module included as extension to the following
software installations:
IO::Stringy (extension)
Perl module included as extension to the following
software installations:
Encode::Locale (extension)
Perl module included as extension to the following
software installations:
XML::SAX::Base (extension)
Perl module included as extension to the following
software installations:
XML::NamespaceSupport (extension)
Perl module included as extension to the following
software installations:
XML::SAX (extension)
Perl module included as extension to the following
software installations:
Test::LeakTrace (extension)
Perl module included as extension to the following
software installations:
Test::Exception (extension)
Perl module included as extension to the following
software installations:
Text::Aligner (extension)
Perl module included as extension to the following
software installations:
Text::Table (extension)
Perl module included as extension to the following
software installations:
MIME::Types (extension)
Perl module included as extension to the following
software installations:
File::Copy::Recursive (extension)
Perl module included as extension to the following
software installations:
Cwd::Guard (extension)
Perl module included as extension to the following
software installations:
Capture::Tiny (extension)
Perl module included as extension to the following
software installations:
File::Copy::Recursive::Reduced (extension)
Perl module included as extension to the following
software installations:
Module::Build::XSUtil (extension)
Perl module included as extension to the following
software installations:
Tie::Function (extension)
Perl module included as extension to the following
software installations:
Template::Plugin::Number::Format (extension)
Perl module included as extension to the following
software installations:
HTML::Parser (extension)
Perl module included as extension to the following
software installations:
Date::Handler (extension)
Perl module included as extension to the following
software installations:
Params::Util (extension)
Perl module included as extension to the following
software installations:
IO::HTML (extension)
Perl module included as extension to the following
software installations:
Data::Grove (extension)
Perl module included as extension to the following
software installations:
Class::ISA (extension)
Perl module included as extension to the following
software installations:
URI (extension)
Perl module included as extension to the following
software installations:
Ima::DBI (extension)
Perl module included as extension to the following
software installations:
Tie::IxHash (extension)
Perl module included as extension to the following
software installations:
GO (extension)
Perl module included as extension to the following
software installations:
Class::DBI::SQLite (extension)
Perl module included as extension to the following
software installations:
Pod::POM (extension)
Perl module included as extension to the following
software installations:
Math::Round (extension)
Perl module included as extension to the following
software installations:
Text::Diff (extension)
Perl module included as extension to the following
software installations:
Log::Message::Simple (extension)
Perl module included as extension to the following
software installations:
Net::SSLeay (extension)
Perl module included as extension to the following
software installations:
IO::Socket::SSL (extension)
Perl module included as extension to the following
software installations:
Fennec::Lite (extension)
Perl module included as extension to the following
software installations:
Sub::Uplevel (extension)
Perl module included as extension to the following
software installations:
Meta::Builder (extension)
Perl module included as extension to the following
software installations:
Exporter::Declare (extension)
Perl module included as extension to the following
software installations:
Getopt::Long (extension)
Perl module included as extension to the following
software installations:
Log::Message (extension)
Perl module included as extension to the following
software installations:
Mouse (extension)
Perl module included as extension to the following
software installations:
Test::Version (extension)
Perl module included as extension to the following
software installations:
DBIx::Admin::TableInfo (extension)
Perl module included as extension to the following
software installations:
Net::HTTP (extension)
Perl module included as extension to the following
software installations:
Test::Deep (extension)
Perl module included as extension to the following
software installations:
Test::Warn (extension)
Perl module included as extension to the following
software installations:
MRO::Compat (extension)
Perl module included as extension to the following
software installations:
Moo (extension)
Perl module included as extension to the following
software installations:
Clone::Choose (extension)
Perl module included as extension to the following
software installations:
Hash::Merge (extension)
Perl module included as extension to the following
software installations:
SQL::Abstract (extension)
Perl module included as extension to the following
software installations:
HTML::Form (extension)
Perl module included as extension to the following
software installations:
Number::Compare (extension)
Perl module included as extension to the following
software installations:
IPC::Run (extension)
Perl module included as extension to the following
software installations:
HTML::Entities::Interpolate (extension)
Perl module included as extension to the following
software installations:
File::Remove (extension)
Perl module included as extension to the following
software installations:
YAML::Tiny (extension)
Perl module included as extension to the following
software installations:
Module::Install (extension)
Perl module included as extension to the following
software installations:
Config::Tiny (extension)
Perl module included as extension to the following
software installations:
Test::ClassAPI (extension)
Perl module included as extension to the following
software installations:
Test::Most (extension)
Perl module included as extension to the following
software installations:
Class::Accessor (extension)
Perl module included as extension to the following
software installations:
Test::Differences (extension)
Perl module included as extension to the following
software installations:
HTTP::Tiny (extension)
Perl module included as extension to the following
software installations:
Package::DeprecationManager (extension)
Perl module included as extension to the following
software installations:
Digest::SHA1 (extension)
Perl module included as extension to the following
software installations:
Date::Language (extension)
Perl module included as extension to the following
software installations:
version (extension)
Perl module included as extension to the following
software installations:
XML::Bare (extension)
Perl module included as extension to the following
software installations:
Dist::CheckConflicts (extension)
Perl module included as extension to the following
software installations:
Sub::Name (extension)
Perl module included as extension to the following
software installations:
Time::Piece (extension)
Perl module included as extension to the following
software installations:
Digest::HMAC (extension)
Perl module included as extension to the following
software installations:
HTTP::Negotiate (extension)
Perl module included as extension to the following
software installations:
MIME::Lite (extension)
Perl module included as extension to the following
software installations:
Crypt::Rijndael (extension)
Perl module included as extension to the following
software installations:
B::Lint (extension)
Perl module included as extension to the following
software installations:
Canary::Stability (extension)
Perl module included as extension to the following
software installations:
AnyEvent (extension)
Perl module included as extension to the following
software installations:
Object::Accessor (extension)
Perl module included as extension to the following
software installations:
Data::UUID (extension)
Perl module included as extension to the following
software installations:
Test::Pod (extension)
Perl module included as extension to the following
software installations:
AppConfig (extension)
Perl module included as extension to the following
software installations:
Net::SMTP::SSL (extension)
Perl module included as extension to the following
software installations:
XML::Tiny (extension)
Perl module included as extension to the following
software installations:
HTML::Tagset (extension)
Perl module included as extension to the following
software installations:
HTML::Tree (extension)
Perl module included as extension to the following
software installations:
Devel::GlobalDestruction (extension)
Perl module included as extension to the following
software installations:
WWW::RobotRules (extension)
Perl module included as extension to the following
software installations:
Expect (extension)
Perl module included as extension to the following
software installations:
Term::UI (extension)
Perl module included as extension to the following
software installations:
Net::SNMP (extension)
Perl module included as extension to the following
software installations:
XML::Filter::BufferText (extension)
Perl module included as extension to the following
software installations:
XML::SAX::Writer (extension)
Perl module included as extension to the following
software installations:
Statistics::Descriptive (extension)
Perl module included as extension to the following
software installations:
Class::Load (extension)
Perl module included as extension to the following
software installations:
LWP::Simple (extension)
Perl module included as extension to the following
software installations:
Time::Piece::MySQL (extension)
Perl module included as extension to the following
software installations:
Package::Stash::XS (extension)
Perl module included as extension to the following
software installations:
Set::Array (extension)
Perl module included as extension to the following
software installations:
boolean (extension)
Perl module included as extension to the following
software installations:
Number::Format (extension)
Perl module included as extension to the following
software installations:
Data::Stag (extension)
Perl module included as extension to the following
software installations:
Test::NoWarnings (extension)
Perl module included as extension to the following
software installations:
Crypt::DES (extension)
Perl module included as extension to the following
software installations:
Exporter (extension)
Perl module included as extension to the following
software installations:
Class::Inspector (extension)
Perl module included as extension to the following
software installations:
Parse::RecDescent (extension)
Perl module included as extension to the following
software installations:
Carp (extension)
Perl module included as extension to the following
software installations:
XML::Parser (extension)
Perl module included as extension to the following
software installations:
XML::XPath (extension)
Perl module included as extension to the following
software installations:
JSON (extension)
Perl module included as extension to the following
software installations:
Sub::Exporter (extension)
Perl module included as extension to the following
software installations:
Class::Load::XS (extension)
Perl module included as extension to the following
software installations:
Set::IntSpan::Fast (extension)
Perl module included as extension to the following
software installations:
Sub::Exporter::Progressive (extension)
Perl module included as extension to the following
software installations:
Data::Dumper::Concise (extension)
Perl module included as extension to the following
software installations:
File::Slurp::Tiny (extension)
Perl module included as extension to the following
software installations:
Algorithm::Diff (extension)
Perl module included as extension to the following
software installations:
Text::Iconv (extension)
Perl module included as extension to the following
software installations:
Class::Data::Inheritable (extension)
Perl module included as extension to the following
software installations:
Text::Balanced (extension)
Perl module included as extension to the following
software installations:
strictures (extension)
Perl module included as extension to the following
software installations:
Switch (extension)
Perl module included as extension to the following
software installations:
File::Which (extension)
Perl module included as extension to the following
software installations:
Email::Date::Format (extension)
Perl module included as extension to the following
software installations:
Error (extension)
Perl module included as extension to the following
software installations:
Mock::Quick (extension)
Perl module included as extension to the following
software installations:
Text::CSV (extension)
Perl module included as extension to the following
software installations:
Test::Output (extension)
Perl module included as extension to the following
software installations:
Class::DBI (extension)
Perl module included as extension to the following
software installations:
List::SomeUtils (extension)
Perl module included as extension to the following
software installations:
List::UtilsBy (extension)
Perl module included as extension to the following
software installations:
List::AllUtils (extension)
Perl module included as extension to the following
software installations:
UNIVERSAL::moniker (extension)
Perl module included as extension to the following
software installations:
Exception::Class (extension)
Perl module included as extension to the following
software installations:
File::CheckTree (extension)
Perl module included as extension to the following
software installations:
Math::VecStat (extension)
Perl module included as extension to the following
software installations:
Pod::Parser (extension)
Perl module included as extension to the following
software installations:
Pod::LaTeX (extension)
Perl module included as extension to the following
software installations:
Eval::Closure (extension)
Perl module included as extension to the following
software installations:
HTTP::Request (extension)
Perl module included as extension to the following
software installations:
XML::Twig (extension)
Perl module included as extension to the following
software installations:
IO::String (extension)
Perl module included as extension to the following
software installations:
XML::Simple (extension)
Perl module included as extension to the following
software installations:
Sub::Install (extension)
Perl module included as extension to the following
software installations:
HTTP::Cookies (extension)
Perl module included as extension to the following
software installations:
Pod::Plainer (extension)
Perl module included as extension to the following
software installations:
LWP::MediaTypes (extension)
Perl module included as extension to the following
software installations:
Data::Section::Simple (extension)
Perl module included as extension to the following
software installations:
Class::Trigger (extension)
Perl module included as extension to the following
software installations:
Test::Needs (extension)
Perl module included as extension to the following
software installations:
HTTP::Daemon (extension)
Perl module included as extension to the following
software installations:
File::HomeDir (extension)
Perl module included as extension to the following
software installations:
HTTP::Date (extension)
Perl module included as extension to the following
software installations:
Authen::SASL (extension)
Perl module included as extension to the following
software installations:
Clone (extension)
Perl module included as extension to the following
software installations:
Data::Types (extension)
Perl module included as extension to the following
software installations:
Import::Into (extension)
Perl module included as extension to the following
software installations:
DateTime::Tiny (extension)
Perl module included as extension to the following
software installations:
Text::Format (extension)
Perl module included as extension to the following
software installations:
Devel::CheckCompiler (extension)
Perl module included as extension to the following
software installations:
Log::Handler (extension)
Perl module included as extension to the following
software installations:
DBIx::ContextualFetch (extension)
Perl module included as extension to the following
software installations:
Devel::StackTrace (extension)
Perl module included as extension to the following
software installations:
Term::ReadKey (extension)
Perl module included as extension to the following
software installations:
Set::IntSpan (extension)
Perl module included as extension to the following
software installations:
Module::Runtime::Conflicts (extension)
Perl module included as extension to the following
software installations:
Test::CleanNamespaces (extension)
Perl module included as extension to the following
software installations:
Moose (extension)
Perl module included as extension to the following
software installations:
Algorithm::Dependency (extension)
Perl module included as extension to the following
software installations:
Font::TTF (extension)
Perl module included as extension to the following
software installations:
IPC::Run3 (extension)
Perl module included as extension to the following
software installations:
File::Find::Rule (extension)
Perl module included as extension to the following
software installations:
SQL::Statement (extension)
Perl module included as extension to the following
software installations:
File::Slurp (extension)
Perl module included as extension to the following
software installations:
Package::Stash (extension)
Perl module included as extension to the following
software installations:
Data::OptList (extension)
Perl module included as extension to the following
software installations:
Package::Constants (extension)
Perl module included as extension to the following
software installations:
CPANPLUS (extension)
Perl module included as extension to the following
software installations:
IO::Tty (extension)
Perl module included as extension to the following
software installations:
Text::Soundex (extension)
Perl module included as extension to the following
software installations:
Lingua::EN::PluralToSingular (extension)
Perl module included as extension to the following
software installations:
Want (extension)
Perl module included as extension to the following
software installations:
Mail::Util (extension)
Perl module included as extension to the following
software installations:
Test::More::UTF8 (extension)
Perl module included as extension to the following
software installations:
Text::Template (extension)
Perl module included as extension to the following
software installations:
PadWalker (extension)
Perl module included as extension to the following
software installations:
Devel::Cycle (extension)
Perl module included as extension to the following
software installations:
Test::Memory::Cycle (extension)
Perl module included as extension to the following
software installations:
PDF::API2 (extension)
Perl module included as extension to the following
software installations:
Devel::CheckLib (extension)
Perl module included as extension to the following
software installations:
SVG (extension)
Perl module included as extension to the following
software installations:
Statistics::Basic (extension)
Perl module included as extension to the following
software installations:
Log::Log4perl (extension)
Perl module included as extension to the following
software installations:
Math::CDF (extension)
Perl module included as extension to the following
software installations:
Array::Utils (extension)
Perl module included as extension to the following
software installations:
File::Grep (extension)
Perl module included as extension to the following
software installations:
File::Path (extension)
Perl module included as extension to the following
software installations:
File::Slurper (extension)
Perl module included as extension to the following
software installations:
File::Temp (extension)
Perl module included as extension to the following
software installations:
Set::Object (extension)
Perl module included as extension to the following
software installations:
Heap (extension)
Perl module included as extension to the following
software installations:
Graph (extension)
Perl module included as extension to the following
software installations:
Graph::ReadWrite (extension)
Perl module included as extension to the following
software installations:
PerlIO::utf8_strict (extension)
Perl module included as extension to the following
software installations:
Devel::OverloadInfo (extension)
Perl module included as extension to the following
software installations:
Sub::Identify (extension)
Perl module included as extension to the following
software installations:
Digest::MD5::File (extension)
Perl module included as extension to the following
software installations:
String::RewritePrefix (extension)
Perl module included as extension to the following
software installations:
Getopt::Long::Descriptive (extension)
Perl module included as extension to the following
software installations:
App::Cmd (extension)
Perl module included as extension to the following
software installations:
Path::Tiny (extension)
Perl module included as extension to the following
software installations:
Carp::Clan (extension)
Perl module included as extension to the following
software installations:
Sub::Exporter::ForMethods (extension)
Perl module included as extension to the following
software installations:
MooseX::Types (extension)
Perl module included as extension to the following
software installations:
Variable::Magic (extension)
Perl module included as extension to the following
software installations:
B::Hooks::EndOfScope (extension)
Perl module included as extension to the following
software installations:
namespace::clean (extension)
Perl module included as extension to the following
software installations:
namespace::autoclean (extension)
Perl module included as extension to the following
software installations:
File::pushd (extension)
Perl module included as extension to the following
software installations:
MooseX::Types::Perl (extension)
Perl module included as extension to the following
software installations:
Role::Tiny (extension)
Perl module included as extension to the following
software installations:
Specio (extension)
Perl module included as extension to the following
software installations:
Params::ValidationCompiler (extension)
Perl module included as extension to the following
software installations:
Log::Dispatch (extension)
Perl module included as extension to the following
software installations:
String::Flogger (extension)
Perl module included as extension to the following
software installations:
Log::Dispatchouli (extension)
Perl module included as extension to the following
software installations:
Data::Section (extension)
Perl module included as extension to the following
software installations:
Software::License (extension)
Perl module included as extension to the following
software installations:
MooseX::SetOnce (extension)
Perl module included as extension to the following
software installations:
Term::Encoding (extension)
Perl module included as extension to the following
software installations:
Config::MVP (extension)
Perl module included as extension to the following
software installations:
Throwable (extension)
Perl module included as extension to the following
software installations:
Sub::Quote (extension)
Perl module included as extension to the following
software installations:
Role::Identifiable::HasIdent (extension)
Perl module included as extension to the following
software installations:
Role::HasMessage (extension)
Perl module included as extension to the following
software installations:
MooseX::OneArgNew (extension)
Perl module included as extension to the following
software installations:
MooseX::Role::Parameterized (extension)
Perl module included as extension to the following
software installations:
MooseX::LazyRequire (extension)
Perl module included as extension to the following
software installations:
Mixin::Linewise::Readers (extension)
Perl module included as extension to the following
software installations:
Config::INI (extension)
Perl module included as extension to the following
software installations:
String::Truncate (extension)
Perl module included as extension to the following
software installations:
Pod::Eventual (extension)
Perl module included as extension to the following
software installations:
Pod::Elemental (extension)
Perl module included as extension to the following
software installations:
Pod::Weaver (extension)
Perl module included as extension to the following
software installations:
Dist::Zilla (extension)
Perl module included as extension to the following
software installations:
XML::RegExp (extension)
Perl module included as extension to the following
software installations:
XML::DOM (extension)
Perl module included as extension to the following
software installations:
Data::Dump (extension)
Perl module included as extension to the following
software installations:
File::Next (extension)
Perl module included as extension to the following
software installations:
App::cpanminus (extension)
Perl module included as extension to the following
software installations:
Parallel::ForkManager (extension)
Perl module included as extension to the following
software installations:
Logger::Simple (extension)
Perl module included as extension to the following
software installations:
Scalar::Util::Numeric (extension)
Perl module included as extension to the following
software installations:
YAML (extension)
Perl module included as extension to the following
software installations:
Object::InsideOut (extension)
Perl module included as extension to the following
software installations:
Thread::Queue (extension)
Perl module included as extension to the following
software installations:
Time::HiRes (extension)
Perl module included as extension to the following
software installations:
Term::ReadLine::Gnu (extension)
Perl module included as extension to the following
software installations:
ExtUtils::MakeMaker (extension)
Perl module included as extension to the following
software installations:
List::Util (extension)
Perl module included as extension to the following
software installations:
Module::CoreList (extension)
Perl module included as extension to the following
software installations:
Module::Metadata (extension)
Perl module included as extension to the following
software installations:
Params::Check (extension)
Perl module included as extension to the following
software installations:
Locale::Maketext::Simple (extension)
Perl module included as extension to the following
software installations:
Perl::OSType (extension)
Perl module included as extension to the following
software installations:
IPC::Cmd (extension)
Perl module included as extension to the following
software installations:
Pod::Escapes (extension)
Perl module included as extension to the following
software installations:
if (extension)
Perl module included as extension to the following
software installations:
Test (extension)
Perl module included as extension to the following
software installations:
ExtUtils::Constant (extension)
Perl module included as extension to the following
software installations:
ExtUtils::CBuilder (extension)
Perl module included as extension to the following
software installations:
Carp::Heavy (extension)
Perl module included as extension to the following
software installations:
Pod::Simple (extension)
Perl module included as extension to the following
software installations:
Socket (extension)
Perl module included as extension to the following
software installations:
Time::Local (extension)
Perl module included as extension to the following
software installations:
Storable (extension)
Perl module included as extension to the following
software installations:
ExtUtils::ParseXS (extension)
Perl module included as extension to the following
software installations:
Pod::Man (extension)
Perl module included as extension to the following
software installations:
Mozilla::CA (extension)
Perl module included as extension to the following
software installations:
Test::More (extension)
Perl module included as extension to the following
software installations:
Test::RequiresInternet (extension)
Perl module included as extension to the following
software installations:
LWP::Protocol::https (extension)
Perl module included as extension to the following
software installations:
Module::Load (extension)
Perl module included as extension to the following
software installations:
Module::Load::Conditional (extension)
Perl module included as extension to the following
software installations:
parent (extension)
Perl module included as extension to the following
software installations:
Net::Domain (extension)
Perl module included as extension to the following
software installations:
Scalar::Util (extension)
Perl module included as extension to the following
software installations:
Text::ParseWords (extension)
Perl module included as extension to the following
software installations:
Encode (extension)
Perl module included as extension to the following
software installations:
constant (extension)
Perl module included as extension to the following
software installations:
Data::Dumper (extension)
Perl module included as extension to the following
software installations:
Cwd (extension)
Perl module included as extension to the following
software installations:
MIME::Base64 (extension)
Perl module included as extension to the following
software installations:
ExtUtils::CppGuess (extension)
Perl module included as extension to the following
software installations:
XSLoader (extension)
Perl module included as extension to the following
software installations:
AutoLoader (extension)
Perl module included as extension to the following
software installations:
URI::Escape (extension)
Perl module included as extension to the following
software installations:
Set::IntervalTree (extension)
Perl module included as extension to the following
software installations:
MCE::Mutex (extension)
Perl module included as extension to the following
software installations:
Text::CSV_XS (extension)
Perl module included as extension to the following
software installations:
DBD::CSV (extension)
Perl module included as extension to the following
software installations:
Array::Transpose (extension)
Perl module included as extension to the following
software installations:
Config::Simple (extension)
Perl module included as extension to the following
software installations:
Business::ISBN (extension)
Perl module included as extension to the following
software installations:
Business::ISBN::Data (extension)
Perl module included as extension to the following
software installations:
common::sense (extension)
Perl module included as extension to the following
software installations:
JSON::XS (extension)
Perl module included as extension to the following
software installations:
List::MoreUtils::XS (extension)
Perl module included as extension to the following
software installations:
Authen::NTLM (extension)
Perl module included as extension to the following
software installations:
Types::Serialiser (extension)
Perl module included as extension to the following
software installations:
XML::SAX::Expat (extension)
Perl module included as extension to the following
software installations:
Inline (extension)
Perl module included as extension to the following
software installations:
Sys::Info::Base (extension)
Perl module included as extension to the following
software installations:
Sys::Info (extension)
Perl module included as extension to the following
software installations:
HTML::Template (extension)
Perl module included as extension to the following
software installations:
MIME::Charset (extension)
Perl module included as extension to the following
software installations:
Unicode::LineBreak (extension)
Perl module included as extension to the following
software installations:
String::Print (extension)
Perl module included as extension to the following
software installations:
Log::Report (extension)
Perl module included as extension to the following
software installations:
Log::Report::Optional (extension)
Perl module included as extension to the following
software installations:
Sys::Info::Driver::Unknown (extension)
Perl module included as extension to the following
software installations:
Sys::Info::Driver::Linux (extension)
Perl module included as extension to the following
software installations:
Unix::Processors (extension)
Perl module included as extension to the following
software installations:
local::lib (extension)
Perl module included as extension to the following
software installations:
Module::Path (extension)
Perl module included as extension to the following
software installations:
Devel::Size (extension)
Perl module included as extension to the following
software installations:
Math::Utils (extension)
Perl module included as extension to the following
software installations:
threads (extension)
Perl module included as extension to the following
software installations:
IO::File (extension)
Perl module included as extension to the following
software installations:
Test::File (extension)
Perl module included as extension to the following
software installations:
Type::Tiny (extension)
Perl module included as extension to the following
software installations:
B::COW (extension)
Perl module included as extension to the following
software installations:
HTTP::Message (extension)
Perl module included as extension to the following
software installations:
Class::Method::Modifiers (extension)
Perl module included as extension to the following
software installations:
DBIx::Admin::CreateTable (extension)
Perl module included as extension to the following
software installations:
DBIx::Admin::DSNManager (extension)
Perl module included as extension to the following
software installations:
Const::Fast (extension)
Perl module included as extension to the following
software installations:
Ref::Util (extension)
Perl module included as extension to the following
software installations:
Class::XSAccessor (extension)
Perl module included as extension to the following
software installations:
Hash::Objectify (extension)
Perl module included as extension to the following
software installations:
Const::Exporter (extension)
Perl module included as extension to the following
software installations:
Unicode::EastAsianWidth (extension)
Perl module included as extension to the following
software installations:
String::TtyLength (extension)
Perl module included as extension to the following
software installations:
Text::Table::Manifold (extension)
Perl module included as extension to the following
software installations:
HTTP::CookieJar (extension)
Perl module included as extension to the following
software installations:
Parse::Yapp (extension)
Perl module included as extension to the following
software installations:
IO::TieCombine (extension)
Perl module included as extension to the following
software installations:
JSON::MaybeXS (extension)
Perl module included as extension to the following
software installations:
Log::Dispatch::Array (extension)
Perl module included as extension to the following
software installations:
Sub::Exporter::GlobExporter (extension)
Perl module included as extension to the following
software installations:
Test::FailWarnings (extension)
Perl module included as extension to the following
software installations:
Test::CheckDeps (extension)
Perl module included as extension to the following
software installations:
String::Formatter (extension)
Perl module included as extension to the following
software installations:
String::Errf (extension)
Perl module included as extension to the following
software installations:
Test::Object (extension)
Perl module included as extension to the following
software installations:
Hook::LexWrap (extension)
Perl module included as extension to the following
software installations:
Test::SubCalls (extension)
Perl module included as extension to the following
software installations:
PPI (extension)
Perl module included as extension to the following
software installations:
Config::MVP::Reader::INI (extension)
Perl module included as extension to the following
software installations:
CPAN::Uploader (extension)
Perl module included as extension to the following
software installations:
Devel::FindPerl (extension)
Perl module included as extension to the following
software installations:
Perl::PrereqScanner (extension)
Perl module included as extension to the following
software installations:
Spiffy (extension)
Perl module included as extension to the following
software installations:
Test::Base (extension)
Perl module included as extension to the following
software installations:
Test::YAML (extension)
Perl module included as extension to the following
software installations:
Compress::Raw::Zlib (extension)
Perl module included as extension to the following
software installations:
IO::Compress::Zip (extension)
Perl module included as extension to the following
software installations:
Test::Sys::Info (extension)
Perl module included as extension to the following
software installations:
CGI (extension)
Perl module included as extension to the following
software installations:
CPAN::Meta::Requirements (extension)
Perl module included as extension to the following
software installations:
CPAN::Requirements::Dynamic (extension)
Perl module included as extension to the following
software installations:
Compress::Raw::Bzip2 (extension)
Perl module included as extension to the following
software installations:
MIME::Base32 (extension)
Perl module included as extension to the following
software installations:
appdirs (extension)
Python package included as extension to the following
software installations:
flexcache (extension)
Python package included as extension to the following
software installations:
flexparser (extension)
Python package included as extension to the following
software installations:
Pint (extension)
Python package included as extension to the following
software installations:
pyevtk (extension)
Python package included as extension to the following
software installations:
PyOpenGL (extension)
Python package included as extension to the following
software installations:
PyOpenGL-accelerate (extension)
Python package included as extension to the following
software installations:
PyQt-builder (extension)
Python package included as extension to the following
software installations:
PyQt5_sip (extension)
included as extension to the following
software installations:
PyQt5 (extension)
included as extension to the following
software installations:
PyQtWebEngine (extension)
included as extension to the following
software installations:
ndindex (extension)
Python package included as extension to the following
software installations:
blosc2 (extension)
Python package included as extension to the following
software installations:
tables (extension)
Python package included as extension to the following
software installations:
pyvo (extension)
Python package included as extension to the following
software installations:
wheel (extension)
Python package included as extension to the following
software installations:
setuptools (extension)
Python package included as extension to the following
software installations:
pip (extension)
Python package included as extension to the following
software installations:
blist (extension)
Python package included as extension to the following
software installations:
pbr (extension)
Python package included as extension to the following
software installations:
Cython (extension)
Python package included as extension to the following
software installations:
six (extension)
Python package included as extension to the following
software installations:
toml (extension)
Python package included as extension to the following
software installations:
flit_core (extension)
Python package included as extension to the following
software installations:
tomli (extension)
Python package included as extension to the following
software installations:
packaging (extension)
Python package included as extension to the following
software installations:
setuptools_scm (extension)
Python package included as extension to the following
software installations:
python-dateutil (extension)
Python package included as extension to the following
software installations:
decorator (extension)
Python package included as extension to the following
software installations:
liac-arff (extension)
Python package included as extension to the following
software installations:
pycryptodome (extension)
Python package included as extension to the following
software installations:
ecdsa (extension)
Python package included as extension to the following
software installations:
ipaddress (extension)
Python package included as extension to the following
software installations:
asn1crypto (extension)
Python package included as extension to the following
software installations:
idna (extension)
Python package included as extension to the following
software installations:
pycparser (extension)
Python package included as extension to the following
software installations:
cffi (extension)
Python package included as extension to the following
software installations:
semantic_version (extension)
Python package included as extension to the following
software installations:
typing_extensions (extension)
Python package included as extension to the following
software installations:
setuptools-rust (extension)
Python package included as extension to the following
software installations:
cryptography (extension)
Python package included as extension to the following
software installations:
pyasn1 (extension)
Python package included as extension to the following
software installations:
PyNaCl (extension)
Python package included as extension to the following
software installations:
bcrypt (extension)
Python package included as extension to the following
software installations:
paramiko (extension)
Python package included as extension to the following
software installations:
pyparsing (extension)
Python package included as extension to the following
software installations:
netifaces (extension)
Python package included as extension to the following
software installations:
netaddr (extension)
Python package included as extension to the following
software installations:
mock (extension)
Python package included as extension to the following
software installations:
pytz (extension)
Python package included as extension to the following
software installations:
bitstring (extension)
Python package included as extension to the following
software installations:
distlib (extension)
Python package included as extension to the following
software installations:
filelock (extension)
Python package included as extension to the following
software installations:
zipp (extension)
Python package included as extension to the following
software installations:
importlib_metadata (extension)
Python package included as extension to the following
software installations:
backports.entry-points-selectable (extension)
Python package included as extension to the following
software installations:
pathspec (extension)
Python package included as extension to the following
software installations:
pluggy (extension)
Python package included as extension to the following
software installations:
editables (extension)
Python package included as extension to the following
software installations:
hatchling (extension)
Python package included as extension to the following
software installations:
hatch_vcs (extension)
Python package included as extension to the following
software installations:
platformdirs (extension)
Python package included as extension to the following
software installations:
scandir (extension)
Python package included as extension to the following
software installations:
pathlib2 (extension)
Python package included as extension to the following
software installations:
importlib_resources (extension)
Python package included as extension to the following
software installations:
virtualenv (extension)
Python package included as extension to the following
software installations:
docopt (extension)
Python package included as extension to the following
software installations:
joblib (extension)
Python package included as extension to the following
software installations:
chardet (extension)
Python package included as extension to the following
software installations:
certifi (extension)
Python package included as extension to the following
software installations:
urllib3 (extension)
Python package included as extension to the following
software installations:
charset-normalizer (extension)
Python package included as extension to the following
software installations:
requests (extension)
Python package included as extension to the following
software installations:
xlrd (extension)
Python package included as extension to the following
software installations:
py_expression_eval (extension)
Python package included as extension to the following
software installations:
ujson (extension)
Python package included as extension to the following
software installations:
atomicwrites (extension)
Python package included as extension to the following
software installations:
py (extension)
Python package included as extension to the following
software installations:
more-itertools (extension)
Python package included as extension to the following
software installations:
attrs (extension)
Python package included as extension to the following
software installations:
backports.functools_lru_cache (extension)
Python package included as extension to the following
software installations:
wcwidth (extension)
Python package included as extension to the following
software installations:
iniconfig (extension)
Python package included as extension to the following
software installations:
colorama (extension)
Python package included as extension to the following
software installations:
flit_scm (extension)
Python package included as extension to the following
software installations:
exceptiongroup (extension)
Python package included as extension to the following
software installations:
pytest (extension)
Python package included as extension to the following
software installations:
Jinja2 (extension)
Python package included as extension to the following
software installations:
sphinxcontrib-serializinghtml (extension)
Python package included as extension to the following
software installations:
sphinxcontrib-websupport (extension)
Python package included as extension to the following
software installations:
imagesize (extension)
Python package included as extension to the following
software installations:
docutils (extension)
Python package included as extension to the following
software installations:
snowballstemmer (extension)
Python package included as extension to the following
software installations:
alabaster (extension)
Python package included as extension to the following
software installations:
sphinxcontrib-applehelp (extension)
Python package included as extension to the following
software installations:
sphinxcontrib-devhelp (extension)
Python package included as extension to the following
software installations:
sphinxcontrib-htmlhelp (extension)
Python package included as extension to the following
software installations:
sphinxcontrib-jsmath (extension)
Python package included as extension to the following
software installations:
sphinxcontrib-qthelp (extension)
Python package included as extension to the following
software installations:
Babel (extension)
Python package included as extension to the following
software installations:
Sphinx (extension)
Python package included as extension to the following
software installations:
sphinx-bootstrap-theme (extension)
Python package included as extension to the following
software installations:
click (extension)
Python package included as extension to the following
software installations:
psutil (extension)
Python package included as extension to the following
software installations:
future (extension)
Python package included as extension to the following
software installations:
sortedcontainers (extension)
Python package included as extension to the following
software installations:
intervaltree (extension)
Python package included as extension to the following
software installations:
pytoml (extension)
Python package included as extension to the following
software installations:
zipfile36 (extension)
Python package included as extension to the following
software installations:
tomli_w (extension)
Python package included as extension to the following
software installations:
flit (extension)
Python package included as extension to the following
software installations:
intreehooks (extension)
Python package included as extension to the following
software installations:
pylev (extension)
Python package included as extension to the following
software installations:
pastel (extension)
Python package included as extension to the following
software installations:
crashtest (extension)
Python package included as extension to the following
software installations:
clikit (extension)
Python package included as extension to the following
software installations:
jeepney (extension)
Python package included as extension to the following
software installations:
SecretStorage (extension)
Python package included as extension to the following
software installations:
keyring (extension)
Python package included as extension to the following
software installations:
jaraco.classes (extension)
Python package included as extension to the following
software installations:
keyrings.alt (extension)
Python package included as extension to the following
software installations:
tomlkit (extension)
Python package included as extension to the following
software installations:
shellingham (extension)
Python package included as extension to the following
software installations:
requests-toolbelt (extension)
Python package included as extension to the following
software installations:
pyrsistent (extension)
Python package included as extension to the following
software installations:
pkginfo (extension)
Python package included as extension to the following
software installations:
ptyprocess (extension)
Python package included as extension to the following
software installations:
pexpect (extension)
Python package included as extension to the following
software installations:
hatch_fancy_pypi_readme (extension)
Python package included as extension to the following
software installations:
jsonschema (extension)
Python package included as extension to the following
software installations:
simplejson (extension)
Python package included as extension to the following
software installations:
webencodings (extension)
Python package included as extension to the following
software installations:
html5lib (extension)
Python package included as extension to the following
software installations:
cleo (extension)
Python package included as extension to the following
software installations:
cachy (extension)
Python package included as extension to the following
software installations:
CacheControl (extension)
Python package included as extension to the following
software installations:
lockfile (extension)
Python package included as extension to the following
software installations:
poetry-core (extension)
Python package included as extension to the following
software installations:
glob2 (extension)
Python package included as extension to the following
software installations:
dulwich (extension)
Python package included as extension to the following
software installations:
poetry_plugin_export (extension)
Python package included as extension to the following
software installations:
poetry (extension)
Python package included as extension to the following
software installations:
fsspec (extension)
Python package included as extension to the following
software installations:
threadpoolctl (extension)
Python package included as extension to the following
software installations:
simplegeneric (extension)
Python package included as extension to the following
software installations:
pooch (extension)
Python package included as extension to the following
software installations:
doit (extension)
Python package included as extension to the following
software installations:
cloudpickle (extension)
Python package included as extension to the following
software installations:
pydevtool (extension)
Python package included as extension to the following
software installations:
execnet (extension)
Python package included as extension to the following
software installations:
pytest-xdist (extension)
Python package included as extension to the following
software installations:
setuptools-scm (extension)
Python package included as extension to the following
software installations:
distro (extension)
Python package included as extension to the following
software installations:
rapidfuzz (extension)
Python package included as extension to the following
software installations:
bitarray (extension)
Python package included as extension to the following
software installations:
sphinxcontrib_serializinghtml (extension)
Python package included as extension to the following
software installations:
sphinxcontrib_websupport (extension)
Python package included as extension to the following
software installations:
sphinxcontrib_applehelp (extension)
Python package included as extension to the following
software installations:
sphinxcontrib_devhelp (extension)
Python package included as extension to the following
software installations:
sphinxcontrib_htmlhelp (extension)
Python package included as extension to the following
software installations:
sphinxcontrib_qthelp (extension)
Python package included as extension to the following
software installations:
sphinx (extension)
Python package included as extension to the following
software installations:
cachecontrol (extension)
Python package included as extension to the following
software installations:
semantic-version (extension)
Python package included as extension to the following
software installations:
importlib-metadata (extension)
Python package included as extension to the following
software installations:
importlib-resources (extension)
Python package included as extension to the following
software installations:
py-expression-eval (extension)
Python package included as extension to the following
software installations:
backports.functools-lru-cache (extension)
Python package included as extension to the following
software installations:
tomli-w (extension)
Python package included as extension to the following
software installations:
jaraco.context (extension)
Python package included as extension to the following
software installations:
jsonschema-specifications (extension)
Python package included as extension to the following
software installations:
referencing (extension)
Python package included as extension to the following
software installations:
rpds-py (extension)
Python package included as extension to the following
software installations:
roman-numerals-py (extension)
Python package included as extension to the following
software installations:
jaraco.functools (extension)
Python package included as extension to the following
software installations:
b (extension)
R library included as extension to the following
software installations:
c (extension)
R library included as extension to the following
software installations:
d (extension)
R library included as extension to the following
software installations:
g (extension)
R library included as extension to the following
software installations:
m (extension)
R library included as extension to the following
software installations:
p (extension)
R library included as extension to the following
software installations:
s (extension)
R library included as extension to the following
software installations:
t (extension)
R library included as extension to the following
software installations:
u (extension)
R library included as extension to the following
software installations:
abind (extension)
R library included as extension to the following
software installations:
magic (extension)
R library included as extension to the following
software installations:
Rcpp (extension)
R library included as extension to the following
software installations:
RcppProgress (extension)
R library included as extension to the following
software installations:
lpSolve (extension)
R library included as extension to the following
software installations:
linprog (extension)
R library included as extension to the following
software installations:
geometry (extension)
R library included as extension to the following
software installations:
bit (extension)
R library included as extension to the following
software installations:
digest (extension)
R library included as extension to the following
software installations:
filehash (extension)
R library included as extension to the following
software installations:
ff (extension)
R library included as extension to the following
software installations:
bnlearn (extension)
R library included as extension to the following
software installations:
bootstrap (extension)
R library included as extension to the following
software installations:
combinat (extension)
R library included as extension to the following
software installations:
deal (extension)
R library included as extension to the following
software installations:
fdrtool (extension)
R library included as extension to the following
software installations:
formatR (extension)
R library included as extension to the following
software installations:
gtools (extension)
R library included as extension to the following
software installations:
gdata (extension)
R library included as extension to the following
software installations:
GSA (extension)
R library included as extension to the following
software installations:
xfun (extension)
R library included as extension to the following
software installations:
highr (extension)
R library included as extension to the following
software installations:
infotheo (extension)
R library included as extension to the following
software installations:
lars (extension)
R library included as extension to the following
software installations:
lazy (extension)
R library included as extension to the following
software installations:
kernlab (extension)
R library included as extension to the following
software installations:
mime (extension)
R library included as extension to the following
software installations:
commonmark (extension)
R library included as extension to the following
software installations:
markdown (extension)
R library included as extension to the following
software installations:
mlbench (extension)
R library included as extension to the following
software installations:
NLP (extension)
R library included as extension to the following
software installations:
mclust (extension)
R library included as extension to the following
software installations:
RANN (extension)
R library included as extension to the following
software installations:
rmeta (extension)
R library included as extension to the following
software installations:
MASS (extension)
R library included as extension to the following
software installations:
lattice (extension)
R library included as extension to the following
software installations:
nlme (extension)
R library included as extension to the following
software installations:
segmented (extension)
R library included as extension to the following
software installations:
som (extension)
R library included as extension to the following
software installations:
SuppDists (extension)
R library included as extension to the following
software installations:
stabledist (extension)
R library included as extension to the following
software installations:
survivalROC (extension)
R library included as extension to the following
software installations:
pspline (extension)
R library included as extension to the following
software installations:
timeDate (extension)
R library included as extension to the following
software installations:
longmemo (extension)
R library included as extension to the following
software installations:
ADGofTest (extension)
R library included as extension to the following
software installations:
pixmap (extension)
R library included as extension to the following
software installations:
sp (extension)
R library included as extension to the following
software installations:
pkgconfig (extension)
R library included as extension to the following
software installations:
rlang (extension)
R library included as extension to the following
software installations:
ellipsis (extension)
R library included as extension to the following
software installations:
glue (extension)
R library included as extension to the following
software installations:
cli (extension)
R library included as extension to the following
software installations:
lifecycle (extension)
R library included as extension to the following
software installations:
vctrs (extension)
R library included as extension to the following
software installations:
hms (extension)
R library included as extension to the following
software installations:
prettyunits (extension)
R library included as extension to the following
software installations:
R6 (extension)
R library included as extension to the following
software installations:
crayon (extension)
R library included as extension to the following
software installations:
progress (extension)
R library included as extension to the following
software installations:
RcppArmadillo (extension)
R library included as extension to the following
software installations:
ade4 (extension)
R library included as extension to the following
software installations:
AlgDesign (extension)
R library included as extension to the following
software installations:
base64enc (extension)
R library included as extension to the following
software installations:
BH (extension)
R library included as extension to the following
software installations:
brew (extension)
R library included as extension to the following
software installations:
Matrix (extension)
R library included as extension to the following
software installations:
Brobdingnag (extension)
R library included as extension to the following
software installations:
corpcor (extension)
R library included as extension to the following
software installations:
longitudinal (extension)
R library included as extension to the following
software installations:
backports (extension)
R library included as extension to the following
software installations:
checkmate (extension)
R library included as extension to the following
software installations:
cubature (extension)
R library included as extension to the following
software installations:
DEoptimR (extension)
R library included as extension to the following
software installations:
fastmatch (extension)
R library included as extension to the following
software installations:
iterators (extension)
R library included as extension to the following
software installations:
maps (extension)
R library included as extension to the following
software installations:
nnls (extension)
R library included as extension to the following
software installations:
sendmailR (extension)
R library included as extension to the following
software installations:
dotCall64 (extension)
R library included as extension to the following
software installations:
spam (extension)
R library included as extension to the following
software installations:
subplex (extension)
R library included as extension to the following
software installations:
stringi (extension)
R library included as extension to the following
software installations:
magrittr (extension)
R library included as extension to the following
software installations:
stringr (extension)
R library included as extension to the following
software installations:
evaluate (extension)
R library included as extension to the following
software installations:
logspline (extension)
R library included as extension to the following
software installations:
ncbit (extension)
R library included as extension to the following
software installations:
permute (extension)
R library included as extension to the following
software installations:
plotrix (extension)
R library included as extension to the following
software installations:
randomForest (extension)
R library included as extension to the following
software installations:
scatterplot3d (extension)
R library included as extension to the following
software installations:
SparseM (extension)
R library included as extension to the following
software installations:
tripack (extension)
R library included as extension to the following
software installations:
irace (extension)
R library included as extension to the following
software installations:
rJava (extension)
R library included as extension to the following
software installations:
RColorBrewer (extension)
R library included as extension to the following
software installations:
png (extension)
R library included as extension to the following
software installations:
jpeg (extension)
R library included as extension to the following
software installations:
deldir (extension)
R library included as extension to the following
software installations:
RcppEigen (extension)
R library included as extension to the following
software installations:
interp (extension)
R library included as extension to the following
software installations:
latticeExtra (extension)
R library included as extension to the following
software installations:
plyr (extension)
R library included as extension to the following
software installations:
gtable (extension)
R library included as extension to the following
software installations:
reshape2 (extension)
R library included as extension to the following
software installations:
dichromat (extension)
R library included as extension to the following
software installations:
colorspace (extension)
R library included as extension to the following
software installations:
munsell (extension)
R library included as extension to the following
software installations:
labeling (extension)
R library included as extension to the following
software installations:
viridisLite (extension)
R library included as extension to the following
software installations:
farver (extension)
R library included as extension to the following
software installations:
scales (extension)
R library included as extension to the following
software installations:
utf8 (extension)
R library included as extension to the following
software installations:
zeallot (extension)
R library included as extension to the following
software installations:
assertthat (extension)
R library included as extension to the following
software installations:
fansi (extension)
R library included as extension to the following
software installations:
pillar (extension)
R library included as extension to the following
software installations:
tibble (extension)
R library included as extension to the following
software installations:
lazyeval (extension)
R library included as extension to the following
software installations:
withr (extension)
R library included as extension to the following
software installations:
mgcv (extension)
R library included as extension to the following
software installations:
rprojroot (extension)
R library included as extension to the following
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uuid (extension)
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animation (extension)
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fields (extension)
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geiger (extension)
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libcoin (extension)
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weights (extension)
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pracma (extension)
R library included as extension to the following
software installations:
RCurl (extension)
R library included as extension to the following
software installations:
bio3d (extension)
R library included as extension to the following
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AUC (extension)
R library included as extension to the following
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interpretR (extension)
R library included as extension to the following
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cvAUC (extension)
R library included as extension to the following
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SuperLearner (extension)
R library included as extension to the following
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mediation (extension)
R library included as extension to the following
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CVST (extension)
R library included as extension to the following
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DRR (extension)
R library included as extension to the following
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dimRed (extension)
R library included as extension to the following
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ddalpha (extension)
R library included as extension to the following
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RcppRoll (extension)
R library included as extension to the following
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adabag (extension)
R library included as extension to the following
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parallelMap (extension)
R library included as extension to the following
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ParamHelpers (extension)
R library included as extension to the following
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ggvis (extension)
R library included as extension to the following
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mlr (extension)
R library included as extension to the following
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unbalanced (extension)
R library included as extension to the following
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RSNNS (extension)
R library included as extension to the following
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abc.data (extension)
R library included as extension to the following
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abc (extension)
R library included as extension to the following
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lhs (extension)
R library included as extension to the following
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tensorA (extension)
R library included as extension to the following
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EasyABC (extension)
R library included as extension to the following
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whisker (extension)
R library included as extension to the following
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roxygen2 (extension)
R library included as extension to the following
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git2r (extension)
R library included as extension to the following
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rversions (extension)
R library included as extension to the following
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xopen (extension)
R library included as extension to the following
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sessioninfo (extension)
R library included as extension to the following
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rcmdcheck (extension)
R library included as extension to the following
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remotes (extension)
R library included as extension to the following
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clisymbols (extension)
R library included as extension to the following
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ini (extension)
R library included as extension to the following
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gitcreds (extension)
R library included as extension to the following
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httr2 (extension)
R library included as extension to the following
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gh (extension)
R library included as extension to the following
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credentials (extension)
R library included as extension to the following
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gert (extension)
R library included as extension to the following
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usethis (extension)
R library included as extension to the following
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covr (extension)
R library included as extension to the following
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downlit (extension)
R library included as extension to the following
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systemfonts (extension)
R library included as extension to the following
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textshaping (extension)
R library included as extension to the following
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ragg (extension)
R library included as extension to the following
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pkgdown (extension)
R library included as extension to the following
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profvis (extension)
R library included as extension to the following
software installations:
urlchecker (extension)
R library included as extension to the following
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devtools (extension)
R library included as extension to the following
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Rook (extension)
R library included as extension to the following
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Cairo (extension)
R library included as extension to the following
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RMTstat (extension)
R library included as extension to the following
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Lmoments (extension)
R library included as extension to the following
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distillery (extension)
R library included as extension to the following
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extRemes (extension)
R library included as extension to the following
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tkrplot (extension)
R library included as extension to the following
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misc3d (extension)
R library included as extension to the following
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multicool (extension)
R library included as extension to the following
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plot3D (extension)
R library included as extension to the following
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plot3Drgl (extension)
R library included as extension to the following
software installations:
OceanView (extension)
R library included as extension to the following
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ks (extension)
R library included as extension to the following
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logcondens (extension)
R library included as extension to the following
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Iso (extension)
R library included as extension to the following
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penalized (extension)
R library included as extension to the following
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clusterRepro (extension)
R library included as extension to the following
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data.tree (extension)
R library included as extension to the following
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influenceR (extension)
R library included as extension to the following
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visNetwork (extension)
R library included as extension to the following
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downloader (extension)
R library included as extension to the following
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DiagrammeR (extension)
R library included as extension to the following
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randomForestSRC (extension)
R library included as extension to the following
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sm (extension)
R library included as extension to the following
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pbivnorm (extension)
R library included as extension to the following
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lavaan (extension)
R library included as extension to the following
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matrixcalc (extension)
R library included as extension to the following
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arm (extension)
R library included as extension to the following
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mi (extension)
R library included as extension to the following
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servr (extension)
R library included as extension to the following
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rgexf (extension)
R library included as extension to the following
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sem (extension)
R library included as extension to the following
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statnet.common (extension)
R library included as extension to the following
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network (extension)
R library included as extension to the following
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rle (extension)
R library included as extension to the following
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sna (extension)
R library included as extension to the following
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glasso (extension)
R library included as extension to the following
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huge (extension)
R library included as extension to the following
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d3Network (extension)
R library included as extension to the following
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BDgraph (extension)
R library included as extension to the following
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graphlayouts (extension)
R library included as extension to the following
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tweenr (extension)
R library included as extension to the following
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ggforce (extension)
R library included as extension to the following
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tidygraph (extension)
R library included as extension to the following
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ggraph (extension)
R library included as extension to the following
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qgraph (extension)
R library included as extension to the following
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HWxtest (extension)
R library included as extension to the following
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diveRsity (extension)
R library included as extension to the following
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doSNOW (extension)
R library included as extension to the following
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geepack (extension)
R library included as extension to the following
software installations:
biom (extension)
R library included as extension to the following
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pim (extension)
R library included as extension to the following
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minpack.lm (extension)
R library included as extension to the following
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rootSolve (extension)
R library included as extension to the following
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diagram (extension)
R library included as extension to the following
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FME (extension)
R library included as extension to the following
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bmp (extension)
R library included as extension to the following
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tiff (extension)
R library included as extension to the following
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readbitmap (extension)
R library included as extension to the following
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imager (extension)
R library included as extension to the following
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signal (extension)
R library included as extension to the following
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tuneR (extension)
R library included as extension to the following
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pastecs (extension)
R library included as extension to the following
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audio (extension)
R library included as extension to the following
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fftw (extension)
R library included as extension to the following
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seewave (extension)
R library included as extension to the following
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gsw (extension)
R library included as extension to the following
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wk (extension)
R library included as extension to the following
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s2 (extension)
R library included as extension to the following
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sf (extension)
R library included as extension to the following
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oce (extension)
R library included as extension to the following
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ineq (extension)
R library included as extension to the following
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soundecology (extension)
R library included as extension to the following
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memuse (extension)
R library included as extension to the following
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pinfsc50 (extension)
R library included as extension to the following
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vcfR (extension)
R library included as extension to the following
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glmmML (extension)
R library included as extension to the following
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cowplot (extension)
R library included as extension to the following
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tsne (extension)
R library included as extension to the following
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sn (extension)
R library included as extension to the following
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tclust (extension)
R library included as extension to the following
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ranger (extension)
R library included as extension to the following
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hexbin (extension)
R library included as extension to the following
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lobstr (extension)
R library included as extension to the following
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pryr (extension)
R library included as extension to the following
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moments (extension)
R library included as extension to the following
software installations:
laeken (extension)
R library included as extension to the following
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VIM (extension)
R library included as extension to the following
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smoother (extension)
R library included as extension to the following
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dynamicTreeCut (extension)
R library included as extension to the following
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beeswarm (extension)
R library included as extension to the following
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vipor (extension)
R library included as extension to the following
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ggbeeswarm (extension)
R library included as extension to the following
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shinydashboard (extension)
R library included as extension to the following
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rrcov (extension)
R library included as extension to the following
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WriteXLS (extension)
R library included as extension to the following
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bst (extension)
R library included as extension to the following
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pamr (extension)
R library included as extension to the following
software installations:
WeightSVM (extension)
R library included as extension to the following
software installations:
mpath (extension)
R library included as extension to the following
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timereg (extension)
R library included as extension to the following
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peperr (extension)
R library included as extension to the following
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heatmap3 (extension)
R library included as extension to the following
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GlobalOptions (extension)
R library included as extension to the following
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circlize (extension)
R library included as extension to the following
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GetoptLong (extension)
R library included as extension to the following
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dendextend (extension)
R library included as extension to the following
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RInside (extension)
R library included as extension to the following
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limSolve (extension)
R library included as extension to the following
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dbplyr (extension)
R library included as extension to the following
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modelr (extension)
R library included as extension to the following
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debugme (extension)
R library included as extension to the following
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reprex (extension)
R library included as extension to the following
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selectr (extension)
R library included as extension to the following
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rvest (extension)
R library included as extension to the following
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dtplyr (extension)
R library included as extension to the following
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gargle (extension)
R library included as extension to the following
software installations:
googledrive (extension)
R library included as extension to the following
software installations:
ids (extension)
R library included as extension to the following
software installations:
googlesheets4 (extension)
R library included as extension to the following
software installations:
conflicted (extension)
R library included as extension to the following
software installations:
tidyverse (extension)
R library included as extension to the following
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R.rsp (extension)
R library included as extension to the following
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gdistance (extension)
R library included as extension to the following
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vioplot (extension)
R library included as extension to the following
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emulator (extension)
R library included as extension to the following
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gmm (extension)
R library included as extension to the following
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tmvtnorm (extension)
R library included as extension to the following
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IDPmisc (extension)
R library included as extension to the following
software installations:
gap.datasets (extension)
R library included as extension to the following
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gap (extension)
R library included as extension to the following
software installations:
qrnn (extension)
R library included as extension to the following
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TMB (extension)
R library included as extension to the following
software installations:
glmmTMB (extension)
R library included as extension to the following
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gmp (extension)
R library included as extension to the following
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ROI (extension)
R library included as extension to the following
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Rglpk (extension)
R library included as extension to the following
software installations:
ROI.plugin.glpk (extension)
R library included as extension to the following
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spaMM (extension)
R library included as extension to the following
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qgam (extension)
R library included as extension to the following
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DHARMa (extension)
R library included as extension to the following
software installations:
mvnfast (extension)
R library included as extension to the following
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bridgesampling (extension)
R library included as extension to the following
software installations:
BayesianTools (extension)
R library included as extension to the following
software installations:
gomms (extension)
R library included as extension to the following
software installations:
feather (extension)
R library included as extension to the following
software installations:
dummies (extension)
R library included as extension to the following
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SimSeq (extension)
R library included as extension to the following
software installations:
uniqueAtomMat (extension)
R library included as extension to the following
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PoissonSeq (extension)
R library included as extension to the following
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aod (extension)
R library included as extension to the following
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cghFLasso (extension)
R library included as extension to the following
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svd (extension)
R library included as extension to the following
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Rssa (extension)
R library included as extension to the following
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JBTools (extension)
R library included as extension to the following
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RUnit (extension)
R library included as extension to the following
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DistributionUtils (extension)
R library included as extension to the following
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gapfill (extension)
R library included as extension to the following
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gee (extension)
R library included as extension to the following
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Matching (extension)
R library included as extension to the following
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MatchIt (extension)
R library included as extension to the following
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RItools (extension)
R library included as extension to the following
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mitools (extension)
R library included as extension to the following
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survey (extension)
R library included as extension to the following
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rlemon (extension)
R library included as extension to the following
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optmatch (extension)
R library included as extension to the following
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SPAtest (extension)
R library included as extension to the following
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RSpectra (extension)
R library included as extension to the following
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SKAT (extension)
R library included as extension to the following
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GillespieSSA (extension)
R library included as extension to the following
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startupmsg (extension)
R library included as extension to the following
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distr (extension)
R library included as extension to the following
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distrEx (extension)
R library included as extension to the following
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minerva (extension)
R library included as extension to the following
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RcppTOML (extension)
R library included as extension to the following
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here (extension)
R library included as extension to the following
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reticulate (extension)
R library included as extension to the following
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umap (extension)
R library included as extension to the following
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KODAMA (extension)
R library included as extension to the following
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locfdr (extension)
R library included as extension to the following
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ica (extension)
R library included as extension to the following
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dtw (extension)
R library included as extension to the following
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SDMTools (extension)
R library included as extension to the following
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ggridges (extension)
R library included as extension to the following
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TFisher (extension)
R library included as extension to the following
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lsei (extension)
R library included as extension to the following
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npsurv (extension)
R library included as extension to the following
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fitdistrplus (extension)
R library included as extension to the following
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hdf5r (extension)
R library included as extension to the following
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DTRreg (extension)
R library included as extension to the following
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pulsar (extension)
R library included as extension to the following
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bayesm (extension)
R library included as extension to the following
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gsl (extension)
R library included as extension to the following
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energy (extension)
R library included as extension to the following
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compositions (extension)
R library included as extension to the following
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clustree (extension)
R library included as extension to the following
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tweedie (extension)
R library included as extension to the following
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RcppGSL (extension)
R library included as extension to the following
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mvabund (extension)
R library included as extension to the following
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fishMod (extension)
R library included as extension to the following
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alabama (extension)
R library included as extension to the following
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gllvm (extension)
R library included as extension to the following
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grpreg (extension)
R library included as extension to the following
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trust (extension)
R library included as extension to the following
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lpSolveAPI (extension)
R library included as extension to the following
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ergm (extension)
R library included as extension to the following
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networkLite (extension)
R library included as extension to the following
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networkDynamic (extension)
R library included as extension to the following
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tergm (extension)
R library included as extension to the following
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ergm.count (extension)
R library included as extension to the following
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tsna (extension)
R library included as extension to the following
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statnet (extension)
R library included as extension to the following
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aggregation (extension)
R library included as extension to the following
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ComICS (extension)
R library included as extension to the following
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dtangle (extension)
R library included as extension to the following
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mcmc (extension)
R library included as extension to the following
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MCMCpack (extension)
R library included as extension to the following
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shinythemes (extension)
R library included as extension to the following
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csSAM (extension)
R library included as extension to the following
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bridgedist (extension)
R library included as extension to the following
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asnipe (extension)
R library included as extension to the following
software installations:
liquidSVM (extension)
R library included as extension to the following
software installations:
oddsratio (extension)
R library included as extension to the following
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mltools (extension)
R library included as extension to the following
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h2o (extension)
R library included as extension to the following
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mlegp (extension)
R library included as extension to the following
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itertools (extension)
R library included as extension to the following
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missForest (extension)
R library included as extension to the following
software installations:
bartMachineJARs (extension)
R library included as extension to the following
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bartMachine (extension)
R library included as extension to the following
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lqa (extension)
R library included as extension to the following
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PresenceAbsence (extension)
R library included as extension to the following
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GUTS (extension)
R library included as extension to the following
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GenSA (extension)
R library included as extension to the following
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parsedate (extension)
R library included as extension to the following
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circular (extension)
R library included as extension to the following
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cobs (extension)
R library included as extension to the following
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resample (extension)
R library included as extension to the following
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MIIVsem (extension)
R library included as extension to the following
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medflex (extension)
R library included as extension to the following
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Rserve (extension)
R library included as extension to the following
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spls (extension)
R library included as extension to the following
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Boruta (extension)
R library included as extension to the following
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dr (extension)
R library included as extension to the following
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CovSel (extension)
R library included as extension to the following
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tmle (extension)
R library included as extension to the following
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ctmle (extension)
R library included as extension to the following
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BayesPen (extension)
R library included as extension to the following
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inline (extension)
R library included as extension to the following
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BMA (extension)
R library included as extension to the following
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BCEE (extension)
R library included as extension to the following
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bacr (extension)
R library included as extension to the following
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clue (extension)
R library included as extension to the following
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bdsmatrix (extension)
R library included as extension to the following
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fftwtools (extension)
R library included as extension to the following
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imagerExtra (extension)
R library included as extension to the following
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MALDIquant (extension)
R library included as extension to the following
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threejs (extension)
R library included as extension to the following
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LaplacesDemon (extension)
R library included as extension to the following
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rda (extension)
R library included as extension to the following
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sampling (extension)
R library included as extension to the following
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lda (extension)
R library included as extension to the following
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jiebaRD (extension)
R library included as extension to the following
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jiebaR (extension)
R library included as extension to the following
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hdm (extension)
R library included as extension to the following
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abe (extension)
R library included as extension to the following
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SignifReg (extension)
R library included as extension to the following
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bbmle (extension)
R library included as extension to the following
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emdbook (extension)
R library included as extension to the following
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SOAR (extension)
R library included as extension to the following
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rasterVis (extension)
R library included as extension to the following
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tictoc (extension)
R library included as extension to the following
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ISOcodes (extension)
R library included as extension to the following
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stopwords (extension)
R library included as extension to the following
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janeaustenr (extension)
R library included as extension to the following
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SnowballC (extension)
R library included as extension to the following
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tokenizers (extension)
R library included as extension to the following
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hunspell (extension)
R library included as extension to the following
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topicmodels (extension)
R library included as extension to the following
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tidytext (extension)
R library included as extension to the following
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splitstackshape (extension)
R library included as extension to the following
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grImport2 (extension)
R library included as extension to the following
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preseqR (extension)
R library included as extension to the following
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idr (extension)
R library included as extension to the following
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entropy (extension)
R library included as extension to the following
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kedd (extension)
R library included as extension to the following
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HiddenMarkov (extension)
R library included as extension to the following
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lmerTest (extension)
R library included as extension to the following
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loo (extension)
R library included as extension to the following
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RcppParallel (extension)
R library included as extension to the following
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StanHeaders (extension)
R library included as extension to the following
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V8 (extension)
R library included as extension to the following
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rstan (extension)
R library included as extension to the following
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Rborist (extension)
R library included as extension to the following
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VSURF (extension)
R library included as extension to the following
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mRMRe (extension)
R library included as extension to the following
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dHSIC (extension)
R library included as extension to the following
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ggsci (extension)
R library included as extension to the following
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ggsignif (extension)
R library included as extension to the following
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corrplot (extension)
R library included as extension to the following
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rstatix (extension)
R library included as extension to the following
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ggfan (extension)
R library included as extension to the following
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ggpubr (extension)
R library included as extension to the following
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yaImpute (extension)
R library included as extension to the following
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intrinsicDimension (extension)
R library included as extension to the following
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patchwork (extension)
R library included as extension to the following
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leiden (extension)
R library included as extension to the following
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sctransform (extension)
R library included as extension to the following
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packrat (extension)
R library included as extension to the following
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colourpicker (extension)
R library included as extension to the following
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ggExtra (extension)
R library included as extension to the following
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findpython (extension)
R library included as extension to the following
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argparse (extension)
R library included as extension to the following
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intergraph (extension)
R library included as extension to the following
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ggnetwork (extension)
R library included as extension to the following
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qqman (extension)
R library included as extension to the following
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rstantools (extension)
R library included as extension to the following
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distributional (extension)
R library included as extension to the following
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posterior (extension)
R library included as extension to the following
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bayesplot (extension)
R library included as extension to the following
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dygraphs (extension)
R library included as extension to the following
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rsconnect (extension)
R library included as extension to the following
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shinystan (extension)
R library included as extension to the following
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optimx (extension)
R library included as extension to the following
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gamm4 (extension)
R library included as extension to the following
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memisc (extension)
R library included as extension to the following
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mclogit (extension)
R library included as extension to the following
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projpred (extension)
R library included as extension to the following
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brms (extension)
R library included as extension to the following
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drgee (extension)
R library included as extension to the following
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stdReg (extension)
R library included as extension to the following
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mcmcse (extension)
R library included as extension to the following
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copCAR (extension)
R library included as extension to the following
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batchmeans (extension)
R library included as extension to the following
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ngspatial (extension)
R library included as extension to the following
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BIGL (extension)
R library included as extension to the following
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drugCombo (extension)
R library included as extension to the following
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betareg (extension)
R library included as extension to the following
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unmarked (extension)
R library included as extension to the following
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maxlike (extension)
R library included as extension to the following
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coxme (extension)
R library included as extension to the following
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AICcmodavg (extension)
R library included as extension to the following
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pacman (extension)
R library included as extension to the following
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spaa (extension)
R library included as extension to the following
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maxnet (extension)
R library included as extension to the following
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oai (extension)
R library included as extension to the following
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wellknown (extension)
R library included as extension to the following
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rgbif (extension)
R library included as extension to the following
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rgdal (extension)
R library included as extension to the following
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rgeos (extension)
R library included as extension to the following
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mapproj (extension)
R library included as extension to the following
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rbison (extension)
R library included as extension to the following
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rebird (extension)
R library included as extension to the following
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rvertnet (extension)
R library included as extension to the following
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ridigbio (extension)
R library included as extension to the following
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spocc (extension)
R library included as extension to the following
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spThin (extension)
R library included as extension to the following
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rangeModelMetadata (extension)
R library included as extension to the following
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ENMeval (extension)
R library included as extension to the following
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plotmo (extension)
R library included as extension to the following
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earth (extension)
R library included as extension to the following
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mda (extension)
R library included as extension to the following
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biomod2 (extension)
R library included as extension to the following
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poLCA (extension)
R library included as extension to the following
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PermAlgo (extension)
R library included as extension to the following
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coxed (extension)
R library included as extension to the following
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testit (extension)
R library included as extension to the following
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NISTunits (extension)
R library included as extension to the following
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celestial (extension)
R library included as extension to the following
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fasterize (extension)
R library included as extension to the following
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RPMM (extension)
R library included as extension to the following
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RefFreeEWAS (extension)
R library included as extension to the following
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wordcloud (extension)
R library included as extension to the following
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JADE (extension)
R library included as extension to the following
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awsMethods (extension)
R library included as extension to the following
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aws (extension)
R library included as extension to the following
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ruv (extension)
R library included as extension to the following
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mhsmm (extension)
R library included as extension to the following
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dbarts (extension)
R library included as extension to the following
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proftools (extension)
R library included as extension to the following
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NCmisc (extension)
R library included as extension to the following
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reader (extension)
R library included as extension to the following
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gnumeric (extension)
R library included as extension to the following
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tcltk2 (extension)
R library included as extension to the following
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readODS (extension)
R library included as extension to the following
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nortest (extension)
R library included as extension to the following
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EnvStats (extension)
R library included as extension to the following
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outliers (extension)
R library included as extension to the following
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elementR (extension)
R library included as extension to the following
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gWidgets2 (extension)
R library included as extension to the following
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gWidgets2tcltk (extension)
R library included as extension to the following
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mgsub (extension)
R library included as extension to the following
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ie2misc (extension)
R library included as extension to the following
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assertive.base (extension)
R library included as extension to the following
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assertive.properties (extension)
R library included as extension to the following
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assertive.types (extension)
R library included as extension to the following
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assertive.numbers (extension)
R library included as extension to the following
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assertive.strings (extension)
R library included as extension to the following
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assertive.datetimes (extension)
R library included as extension to the following
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assertive.files (extension)
R library included as extension to the following
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assertive.sets (extension)
R library included as extension to the following
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assertive.matrices (extension)
R library included as extension to the following
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assertive.models (extension)
R library included as extension to the following
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assertive.data (extension)
R library included as extension to the following
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assertive.data.uk (extension)
R library included as extension to the following
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assertive.data.us (extension)
R library included as extension to the following
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assertive.reflection (extension)
R library included as extension to the following
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assertive.code (extension)
R library included as extension to the following
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assertive (extension)
R library included as extension to the following
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rdrop2 (extension)
R library included as extension to the following
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Exact (extension)
R library included as extension to the following
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lmom (extension)
R library included as extension to the following
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gld (extension)
R library included as extension to the following
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DescTools (extension)
R library included as extension to the following
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orthopolynom (extension)
R library included as extension to the following
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gaussquad (extension)
R library included as extension to the following
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nlsem (extension)
R library included as extension to the following
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tableone (extension)
R library included as extension to the following
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jstable (extension)
R library included as extension to the following
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RCAL (extension)
R library included as extension to the following
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stargazer (extension)
R library included as extension to the following
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sensemakr (extension)
R library included as extension to the following
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CompQuadForm (extension)
R library included as extension to the following
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nonnest2 (extension)
R library included as extension to the following
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blavaan (extension)
R library included as extension to the following
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mathjaxr (extension)
R library included as extension to the following
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metadat (extension)
R library included as extension to the following
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metafor (extension)
R library included as extension to the following
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RNifti (extension)
R library included as extension to the following
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oro.nifti (extension)
R library included as extension to the following
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fmri (extension)
R library included as extension to the following
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linkcomm (extension)
R library included as extension to the following
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rnetcarto (extension)
R library included as extension to the following
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DEoptim (extension)
R library included as extension to the following
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optextras (extension)
R library included as extension to the following
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setRNG (extension)
R library included as extension to the following
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Rvmmin (extension)
R library included as extension to the following
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Rcgmin (extension)
R library included as extension to the following
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optimr (extension)
R library included as extension to the following
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DMCfun (extension)
R library included as extension to the following
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miceadds (extension)
R library included as extension to the following
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visdat (extension)
R library included as extension to the following
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UpSetR (extension)
R library included as extension to the following
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norm (extension)
R library included as extension to the following
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naniar (extension)
R library included as extension to the following
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stringdist (extension)
R library included as extension to the following
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image.binarization (extension)
R library included as extension to the following
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lassosum (extension)
R library included as extension to the following
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lslx (extension)
R library included as extension to the following
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truncnorm (extension)
R library included as extension to the following
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Rsolnp (extension)
R library included as extension to the following
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regsem (extension)
R library included as extension to the following
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semPLS (extension)
R library included as extension to the following
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GxEScanR (extension)
R library included as extension to the following
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admisc (extension)
R library included as extension to the following
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polycor (extension)
R library included as extension to the following
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multipol (extension)
R library included as extension to the following
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symmoments (extension)
R library included as extension to the following
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rngWELL (extension)
R library included as extension to the following
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randtoolbox (extension)
R library included as extension to the following
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TruncatedNormal (extension)
R library included as extension to the following
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cSEM (extension)
R library included as extension to the following
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cubelyr (extension)
R library included as extension to the following
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furrr (extension)
R library included as extension to the following
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broom.mixed (extension)
R library included as extension to the following
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DiceKriging (extension)
R library included as extension to the following
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grf (extension)
R library included as extension to the following
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xgboost (extension)
R library included as extension to the following
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twang (extension)
R library included as extension to the following
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neuralnet (extension)
R library included as extension to the following
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PCAmatchR (extension)
R library included as extension to the following
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origami (extension)
R library included as extension to the following
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hal9001 (extension)
R library included as extension to the following
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cobalt (extension)
R library included as extension to the following
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CBPS (extension)
R library included as extension to the following
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SBdecomp (extension)
R library included as extension to the following
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naturalsort (extension)
R library included as extension to the following
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lwgeom (extension)
R library included as extension to the following
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finalfit (extension)
R library included as extension to the following
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broom.helpers (extension)
R library included as extension to the following
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bigD (extension)
R library included as extension to the following
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juicyjuice (extension)
R library included as extension to the following
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gt (extension)
R library included as extension to the following
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gtsummary (extension)
R library included as extension to the following
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ncdf4 (extension)
R library included as extension to the following
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geex (extension)
R library included as extension to the following
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momentfit (extension)
R library included as extension to the following
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StatMatch (extension)
R library included as extension to the following
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stars (extension)
R library included as extension to the following
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rapidjsonr (extension)
R library included as extension to the following
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jsonify (extension)
R library included as extension to the following
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geometries (extension)
R library included as extension to the following
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sfheaders (extension)
R library included as extension to the following
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geojsonsf (extension)
R library included as extension to the following
software installations:
leaflet.providers (extension)
R library included as extension to the following
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leaflet (extension)
R library included as extension to the following
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leafsync (extension)
R library included as extension to the following
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leafem (extension)
R library included as extension to the following
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widgetframe (extension)
R library included as extension to the following
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tmaptools (extension)
R library included as extension to the following
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tmap (extension)
R library included as extension to the following
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collapse (extension)
R library included as extension to the following
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genoPlotR (extension)
R library included as extension to the following
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VineCopula (extension)
R library included as extension to the following
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Rmpfr (extension)
R library included as extension to the following
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scam (extension)
R library included as extension to the following
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copula (extension)
R library included as extension to the following
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evd (extension)
R library included as extension to the following
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ismev (extension)
R library included as extension to the following
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GJRM (extension)
R library included as extension to the following
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penfa (extension)
R library included as extension to the following
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kde1d (extension)
R library included as extension to the following
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RcppThread (extension)
R library included as extension to the following
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wdm (extension)
R library included as extension to the following
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rvinecopulib (extension)
R library included as extension to the following
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PearsonDS (extension)
R library included as extension to the following
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covsim (extension)
R library included as extension to the following
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semTools (extension)
R library included as extension to the following
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GPArotation (extension)
R library included as extension to the following
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dcurver (extension)
R library included as extension to the following
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mirt (extension)
R library included as extension to the following
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rpf (extension)
R library included as extension to the following
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OpenMx (extension)
R library included as extension to the following
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matlab (extension)
R library included as extension to the following
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FactorCopula (extension)
R library included as extension to the following
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rpact (extension)
R library included as extension to the following
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ldbounds (extension)
R library included as extension to the following
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catlearn (extension)
R library included as extension to the following
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MetaUtility (extension)
R library included as extension to the following
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EValue (extension)
R library included as extension to the following
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dagitty (extension)
R library included as extension to the following
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ggdag (extension)
R library included as extension to the following
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simex (extension)
R library included as extension to the following
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hash (extension)
R library included as extension to the following
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nabor (extension)
R library included as extension to the following
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harmony (extension)
R library included as extension to the following
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apcluster (extension)
R library included as extension to the following
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DataCombine (extension)
R library included as extension to the following
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docstring (extension)
R library included as extension to the following
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gdalUtils (extension)
R library included as extension to the following
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openair (extension)
R library included as extension to the following
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pdp (extension)
R library included as extension to the following
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date (extension)
R library included as extension to the following
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cmprsk (extension)
R library included as extension to the following
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mets (extension)
R library included as extension to the following
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Publish (extension)
R library included as extension to the following
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riskRegression (extension)
R library included as extension to the following
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pec (extension)
R library included as extension to the following
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pammtools (extension)
R library included as extension to the following
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relsurv (extension)
R library included as extension to the following
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mstate (extension)
R library included as extension to the following
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microbenchmark (extension)
R library included as extension to the following
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prettyGraphs (extension)
R library included as extension to the following
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ExPosition (extension)
R library included as extension to the following
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alluvial (extension)
R library included as extension to the following
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SNFtool (extension)
R library included as extension to the following
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BayesLogit (extension)
R library included as extension to the following
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Hmsc (extension)
R library included as extension to the following
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MonteCarlo (extension)
R library included as extension to the following
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RhpcBLASctl (extension)
R library included as extension to the following
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chkptstanr (extension)
R library included as extension to the following
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MLmetrics (extension)
R library included as extension to the following
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renv (extension)
R library included as extension to the following
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elliptic (extension)
R library included as extension to the following
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contfrac (extension)
R library included as extension to the following
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hypergeo (extension)
R library included as extension to the following
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rtdists (extension)
R library included as extension to the following
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AMAPVox (extension)
R library included as extension to the following
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LCFdata (extension)
R library included as extension to the following
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LMERConvenienceFunctions (extension)
R library included as extension to the following
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HGNChelper (extension)
R library included as extension to the following
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logger (extension)
R library included as extension to the following
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parallelDist (extension)
R library included as extension to the following
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roptim (extension)
R library included as extension to the following
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yulab.utils (extension)
R library included as extension to the following
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ggfun (extension)
R library included as extension to the following
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gridGraphics (extension)
R library included as extension to the following
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ggplotify (extension)
R library included as extension to the following
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aplot (extension)
R library included as extension to the following
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tidytree (extension)
R library included as extension to the following
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ggvenn (extension)
R library included as extension to the following
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scatterpie (extension)
R library included as extension to the following
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shadowtext (extension)
R library included as extension to the following
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random (extension)
R library included as extension to the following
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R2WinBUGS (extension)
R library included as extension to the following
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aricode (extension)
R library included as extension to the following
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DepthProc (extension)
R library included as extension to the following
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dbscan (extension)
R library included as extension to the following
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ggh4x (extension)
R library included as extension to the following
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ComplexUpset (extension)
R library included as extension to the following
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proxyC (extension)
R library included as extension to the following
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changepoint (extension)
R library included as extension to the following
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geeM (extension)
R library included as extension to the following
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ggstance (extension)
R library included as extension to the following
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mosaicCore (extension)
R library included as extension to the following
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ggformula (extension)
R library included as extension to the following
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kinship2 (extension)
R library included as extension to the following
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MESS (extension)
R library included as extension to the following
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smoof (extension)
R library included as extension to the following
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mlrMBO (extension)
R library included as extension to the following
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emoa (extension)
R library included as extension to the following
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webutils (extension)
R library included as extension to the following
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swagger (extension)
R library included as extension to the following
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varhandle (extension)
R library included as extension to the following
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dlm (extension)
R library included as extension to the following
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PMA (extension)
R library included as extension to the following
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unikn (extension)
R library included as extension to the following
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ppcor (extension)
R library included as extension to the following
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berryFunctions (extension)
R library included as extension to the following
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cld2 (extension)
R library included as extension to the following
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crfsuite (extension)
R library included as extension to the following
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doc2vec (extension)
R library included as extension to the following
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fastDummies (extension)
R library included as extension to the following
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quanteda (extension)
R library included as extension to the following
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rlist (extension)
R library included as extension to the following
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ISOweek (extension)
R library included as extension to the following
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sentometrics (extension)
R library included as extension to the following
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tau (extension)
R library included as extension to the following
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textcat (extension)
R library included as extension to the following
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textplot (extension)
R library included as extension to the following
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udpipe (extension)
R library included as extension to the following
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word2vec (extension)
R library included as extension to the following
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epitools (extension)
R library included as extension to the following
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RBesT (extension)
R library included as extension to the following
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svglite (extension)
R library included as extension to the following
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rARPACK (extension)
R library included as extension to the following
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FKSUM (extension)
R library included as extension to the following
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warp (extension)
R library included as extension to the following
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slider (extension)
R library included as extension to the following
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rsample (extension)
R library included as extension to the following
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haldensify (extension)
R library included as extension to the following
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Polychrome (extension)
R library included as extension to the following
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shinycssloaders (extension)
R library included as extension to the following
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princurve (extension)
R library included as extension to the following
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ECOSolveR (extension)
R library included as extension to the following
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scs (extension)
R library included as extension to the following
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osqp (extension)
R library included as extension to the following
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CVXR (extension)
R library included as extension to the following
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tabletools (extension)
R library included as extension to the following
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officer (extension)
R library included as extension to the following
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gfonts (extension)
R library included as extension to the following
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fontBitstreamVera (extension)
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fontLiberation (extension)
R library included as extension to the following
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fontquiver (extension)
R library included as extension to the following
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gdtools (extension)
R library included as extension to the following
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flextable (extension)
R library included as extension to the following
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ridge (extension)
R library included as extension to the following
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gdalUtilities (extension)
R library included as extension to the following
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protolite (extension)
R library included as extension to the following
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jqr (extension)
R library included as extension to the following
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geojson (extension)
R library included as extension to the following
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geojsonio (extension)
R library included as extension to the following
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MODIStsp (extension)
R library included as extension to the following
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BiocGenerics (extension)
R library included as extension to the following
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Biobase (extension)
R library included as extension to the following
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S4Vectors (extension)
R library included as extension to the following
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IRanges (extension)
R library included as extension to the following
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GenomeInfoDbData (extension)
R library included as extension to the following
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GenomeInfoDb (extension)
R library included as extension to the following
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zlibbioc (extension)
R library included as extension to the following
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XVector (extension)
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Biostrings (extension)
R library included as extension to the following
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KEGGREST (extension)
R library included as extension to the following
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AnnotationDbi (extension)
R library included as extension to the following
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GenomicRanges (extension)
R library included as extension to the following
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BiocParallel (extension)
R library included as extension to the following
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Rhtslib (extension)
R library included as extension to the following
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Rsamtools (extension)
R library included as extension to the following
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MatrixGenerics (extension)
R library included as extension to the following
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DelayedArray (extension)
R library included as extension to the following
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SummarizedExperiment (extension)
R library included as extension to the following
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GenomicAlignments (extension)
R library included as extension to the following
software installations:
ShortRead (extension)
R library included as extension to the following
software installations:
graph (extension)
R library included as extension to the following
software installations:
affyio (extension)
R library included as extension to the following
software installations:
preprocessCore (extension)
R library included as extension to the following
software installations:
BiocManager (extension)
R library included as extension to the following
software installations:
affy (extension)
R library included as extension to the following
software installations:
GO.db (extension)
R library included as extension to the following
software installations:
limma (extension)
R library included as extension to the following
software installations:
RBGL (extension)
R library included as extension to the following
software installations:
org.Hs.eg.db (extension)
R library included as extension to the following
software installations:
AnnotationForge (extension)
R library included as extension to the following
software installations:
annaffy (extension)
R library included as extension to the following
software installations:
gcrma (extension)
R library included as extension to the following
software installations:
oligoClasses (extension)
R library included as extension to the following
software installations:
edgeR (extension)
R library included as extension to the following
software installations:
PFAM.db (extension)
R library included as extension to the following
software installations:
perm (extension)
R library included as extension to the following
software installations:
baySeq (extension)
R library included as extension to the following
software installations:
qvalue (extension)
R library included as extension to the following
software installations:
impute (extension)
R library included as extension to the following
software installations:
shinyFiles (extension)
R library included as extension to the following
software installations:
samr (extension)
R library included as extension to the following
software installations:
DEGseq (extension)
R library included as extension to the following
software installations:
hgu133plus2.db (extension)
R library included as extension to the following
software installations:
illuminaio (extension)
R library included as extension to the following
software installations:
BiocIO (extension)
R library included as extension to the following
software installations:
restfulr (extension)
R library included as extension to the following
software installations:
rtracklayer (extension)
R library included as extension to the following
software installations:
filelock (extension)
R library included as extension to the following
software installations:
BiocFileCache (extension)
R library included as extension to the following
software installations:
biomaRt (extension)
R library included as extension to the following
software installations:
GenomicFeatures (extension)
R library included as extension to the following
software installations:
bumphunter (extension)
R library included as extension to the following
software installations:
multtest (extension)
R library included as extension to the following
software installations:
scrime (extension)
R library included as extension to the following
software installations:
siggenes (extension)
R library included as extension to the following
software installations:
DynDoc (extension)
R library included as extension to the following
software installations:
NOISeq (extension)
R library included as extension to the following
software installations:
Rgraphviz (extension)
R library included as extension to the following
software installations:
RNASeqPower (extension)
R library included as extension to the following
software installations:
annotate (extension)
R library included as extension to the following
software installations:
GSEABase (extension)
R library included as extension to the following
software installations:
genefilter (extension)
R library included as extension to the following
software installations:
Category (extension)
R library included as extension to the following
software installations:
GOstats (extension)
R library included as extension to the following
software installations:
BSgenome (extension)
R library included as extension to the following
software installations:
VariantAnnotation (extension)
R library included as extension to the following
software installations:
interactiveDisplayBase (extension)
R library included as extension to the following
software installations:
BiocVersion (extension)
R library included as extension to the following
software installations:
AnnotationHub (extension)
R library included as extension to the following
software installations:
AnnotationFilter (extension)
R library included as extension to the following
software installations:
ProtGenerics (extension)
R library included as extension to the following
software installations:
ensembldb (extension)
R library included as extension to the following
software installations:
biovizBase (extension)
R library included as extension to the following
software installations:
OrganismDbi (extension)
R library included as extension to the following
software installations:
ggbio (extension)
R library included as extension to the following
software installations:
geneplotter (extension)
R library included as extension to the following
software installations:
DESeq2 (extension)
R library included as extension to the following
software installations:
ReportingTools (extension)
R library included as extension to the following
software installations:
Glimma (extension)
R library included as extension to the following
software installations:
affycoretools (extension)
R library included as extension to the following
software installations:
TxDb.Hsapiens.UCSC.hg19.knownGene (extension)
R library included as extension to the following
software installations:
Homo.sapiens (extension)
R library included as extension to the following
software installations:
BSgenome.Hsapiens.UCSC.hg19 (extension)
R library included as extension to the following
software installations:
AgiMicroRna (extension)
R library included as extension to the following
software installations:
geneLenDataBase (extension)
R library included as extension to the following
software installations:
goseq (extension)
R library included as extension to the following
software installations:
KEGGgraph (extension)
R library included as extension to the following
software installations:
GEOquery (extension)
R library included as extension to the following
software installations:
mixOmics (extension)
R library included as extension to the following
software installations:
Rhdf5lib (extension)
R library included as extension to the following
software installations:
rhdf5filters (extension)
R library included as extension to the following
software installations:
rhdf5 (extension)
R library included as extension to the following
software installations:
HDF5Array (extension)
R library included as extension to the following
software installations:
sparseMatrixStats (extension)
R library included as extension to the following
software installations:
DelayedMatrixStats (extension)
R library included as extension to the following
software installations:
minfi (extension)
R library included as extension to the following
software installations:
FDb.InfiniumMethylation.hg19 (extension)
R library included as extension to the following
software installations:
methylumi (extension)
R library included as extension to the following
software installations:
lumi (extension)
R library included as extension to the following
software installations:
widgetTools (extension)
R library included as extension to the following
software installations:
tkWidgets (extension)
R library included as extension to the following
software installations:
Mfuzz (extension)
R library included as extension to the following
software installations:
venn (extension)
R library included as extension to the following
software installations:
maSigPro (extension)
R library included as extension to the following
software installations:
SPIA (extension)
R library included as extension to the following
software installations:
Gviz (extension)
R library included as extension to the following
software installations:
cummeRbund (extension)
R library included as extension to the following
software installations:
GenomicFiles (extension)
R library included as extension to the following
software installations:
derfinderHelper (extension)
R library included as extension to the following
software installations:
derfinder (extension)
R library included as extension to the following
software installations:
polyester (extension)
R library included as extension to the following
software installations:
Rsubread (extension)
R library included as extension to the following
software installations:
pcaMethods (extension)
R library included as extension to the following
software installations:
marray (extension)
R library included as extension to the following
software installations:
CGHbase (extension)
R library included as extension to the following
software installations:
Wrench (extension)
R library included as extension to the following
software installations:
lpsymphony (extension)
R library included as extension to the following
software installations:
IHW (extension)
R library included as extension to the following
software installations:
metagenomeSeq (extension)
R library included as extension to the following
software installations:
gdsfmt (extension)
R library included as extension to the following
software installations:
SNPRelate (extension)
R library included as extension to the following
software installations:
biomformat (extension)
R library included as extension to the following
software installations:
phyloseq (extension)
R library included as extension to the following
software installations:
NADA (extension)
R library included as extension to the following
software installations:
zCompositions (extension)
R library included as extension to the following
software installations:
RcppZiggurat (extension)
R library included as extension to the following
software installations:
Rfast (extension)
R library included as extension to the following
software installations:
ALDEx2 (extension)
R library included as extension to the following
software installations:
dada2 (extension)
R library included as extension to the following
software installations:
LEA (extension)
R library included as extension to the following
software installations:
tximport (extension)
R library included as extension to the following
software installations:
SingleCellExperiment (extension)
R library included as extension to the following
software installations:
beachmat (extension)
R library included as extension to the following
software installations:
RcppAnnoy (extension)
R library included as extension to the following
software installations:
RcppHNSW (extension)
R library included as extension to the following
software installations:
BiocNeighbors (extension)
R library included as extension to the following
software installations:
rsvd (extension)
R library included as extension to the following
software installations:
ScaledMatrix (extension)
R library included as extension to the following
software installations:
BiocSingular (extension)
R library included as extension to the following
software installations:
scuttle (extension)
R library included as extension to the following
software installations:
RcppML (extension)
R library included as extension to the following
software installations:
sitmo (extension)
R library included as extension to the following
software installations:
dqrng (extension)
R library included as extension to the following
software installations:
uwot (extension)
R library included as extension to the following
software installations:
ggrastr (extension)
R library included as extension to the following
software installations:
scater (extension)
R library included as extension to the following
software installations:
bluster (extension)
R library included as extension to the following
software installations:
metapod (extension)
R library included as extension to the following
software installations:
scran (extension)
R library included as extension to the following
software installations:
SC3 (extension)
R library included as extension to the following
software installations:
ComplexHeatmap (extension)
R library included as extension to the following
software installations:
GENIE3 (extension)
R library included as extension to the following
software installations:
dupRadar (extension)
R library included as extension to the following
software installations:
DNAcopy (extension)
R library included as extension to the following
software installations:
sva (extension)
R library included as extension to the following
software installations:
ballgown (extension)
R library included as extension to the following
software installations:
DropletUtils (extension)
R library included as extension to the following
software installations:
DeconRNASeq (extension)
R library included as extension to the following
software installations:
GSVA (extension)
R library included as extension to the following
software installations:
PureCN (extension)
R library included as extension to the following
software installations:
globaltest (extension)
R library included as extension to the following
software installations:
GlobalAncova (extension)
R library included as extension to the following
software installations:
vsn (extension)
R library included as extension to the following
software installations:
mzID (extension)
R library included as extension to the following
software installations:
mzR (extension)
R library included as extension to the following
software installations:
MsCoreUtils (extension)
R library included as extension to the following
software installations:
MSnbase (extension)
R library included as extension to the following
software installations:
MassSpecWavelet (extension)
R library included as extension to the following
software installations:
MsFeatures (extension)
R library included as extension to the following
software installations:
xcms (extension)
R library included as extension to the following
software installations:
CAMERA (extension)
R library included as extension to the following
software installations:
fgsea (extension)
R library included as extension to the following
software installations:
GWASExactHW (extension)
R library included as extension to the following
software installations:
quantsmooth (extension)
R library included as extension to the following
software installations:
GWASTools (extension)
R library included as extension to the following
software installations:
SeqArray (extension)
R library included as extension to the following
software installations:
SeqVarTools (extension)
R library included as extension to the following
software installations:
GENESIS (extension)
R library included as extension to the following
software installations:
MLInterfaces (extension)
R library included as extension to the following
software installations:
pRoloc (extension)
R library included as extension to the following
software installations:
pRolocdata (extension)
R library included as extension to the following
software installations:
fresh (extension)
R library included as extension to the following
software installations:
waiter (extension)
R library included as extension to the following
software installations:
shinydashboardPlus (extension)
R library included as extension to the following
software installations:
shinyhelper (extension)
R library included as extension to the following
software installations:
anytime (extension)
R library included as extension to the following
software installations:
shinyWidgets (extension)
R library included as extension to the following
software installations:
pRolocGUI (extension)
R library included as extension to the following
software installations:
EBImage (extension)
R library included as extension to the following
software installations:
GenomicScores (extension)
R library included as extension to the following
software installations:
BSgenome.Mmusculus.UCSC.mm10 (extension)
R library included as extension to the following
software installations:
TxDb.Mmusculus.UCSC.mm10.knownGene (extension)
R library included as extension to the following
software installations:
regioneR (extension)
R library included as extension to the following
software installations:
InteractionSet (extension)
R library included as extension to the following
software installations:
ChIPpeakAnno (extension)
R library included as extension to the following
software installations:
seqLogo (extension)
R library included as extension to the following
software installations:
rGADEM (extension)
R library included as extension to the following
software installations:
MotifDb (extension)
R library included as extension to the following
software installations:
poweRlaw (extension)
R library included as extension to the following
software installations:
CNEr (extension)
R library included as extension to the following
software installations:
DirichletMultinomial (extension)
R library included as extension to the following
software installations:
TFMPvalue (extension)
R library included as extension to the following
software installations:
TFBSTools (extension)
R library included as extension to the following
software installations:
motifStack (extension)
R library included as extension to the following
software installations:
ATACseqQC (extension)
R library included as extension to the following
software installations:
ResidualMatrix (extension)
R library included as extension to the following
software installations:
batchelor (extension)
R library included as extension to the following
software installations:
gsmoothr (extension)
R library included as extension to the following
software installations:
Ringo (extension)
R library included as extension to the following
software installations:
R.devices (extension)
R library included as extension to the following
software installations:
R.filesets (extension)
R library included as extension to the following
software installations:
aroma.light (extension)
R library included as extension to the following
software installations:
PSCBS (extension)
R library included as extension to the following
software installations:
aroma.core (extension)
R library included as extension to the following
software installations:
R.huge (extension)
R library included as extension to the following
software installations:
aroma.apd (extension)
R library included as extension to the following
software installations:
aroma.affymetrix (extension)
R library included as extension to the following
software installations:
Repitools (extension)
R library included as extension to the following
software installations:
BSgenome.Hsapiens.UCSC.hg38 (extension)
R library included as extension to the following
software installations:
MEDIPS (extension)
R library included as extension to the following
software installations:
RProtoBufLib (extension)
R library included as extension to the following
software installations:
cytolib (extension)
R library included as extension to the following
software installations:
flowCore (extension)
R library included as extension to the following
software installations:
mutoss (extension)
R library included as extension to the following
software installations:
qqconf (extension)
R library included as extension to the following
software installations:
metap (extension)
R library included as extension to the following
software installations:
scattermore (extension)
R library included as extension to the following
software installations:
SeuratObject (extension)
R library included as extension to the following
software installations:
Seurat (extension)
R library included as extension to the following
software installations:
ALL (extension)
R library included as extension to the following
software installations:
ConsensusClusterPlus (extension)
R library included as extension to the following
software installations:
flowViz (extension)
R library included as extension to the following
software installations:
ncdfFlow (extension)
R library included as extension to the following
software installations:
aws.signature (extension)
R library included as extension to the following
software installations:
aws.s3 (extension)
R library included as extension to the following
software installations:
flowWorkspace (extension)
R library included as extension to the following
software installations:
ash (extension)
R library included as extension to the following
software installations:
hdrcde (extension)
R library included as extension to the following
software installations:
rainbow (extension)
R library included as extension to the following
software installations:
fds (extension)
R library included as extension to the following
software installations:
fda (extension)
R library included as extension to the following
software installations:
flowStats (extension)
R library included as extension to the following
software installations:
flowClust (extension)
R library included as extension to the following
software installations:
openCyto (extension)
R library included as extension to the following
software installations:
ggcyto (extension)
R library included as extension to the following
software installations:
CytoML (extension)
R library included as extension to the following
software installations:
colorRamps (extension)
R library included as extension to the following
software installations:
ggnewscale (extension)
R library included as extension to the following
software installations:
ggpointdensity (extension)
R library included as extension to the following
software installations:
FlowSOM (extension)
R library included as extension to the following
software installations:
HMMcopy (extension)
R library included as extension to the following
software installations:
diffcyt (extension)
R library included as extension to the following
software installations:
blme (extension)
R library included as extension to the following
software installations:
remaCor (extension)
R library included as extension to the following
software installations:
variancePartition (extension)
R library included as extension to the following
software installations:
muscat (extension)
R library included as extension to the following
software installations:
IlluminaHumanMethylation450kmanifest (extension)
R library included as extension to the following
software installations:
IlluminaHumanMethylationEPICmanifest (extension)
R library included as extension to the following
software installations:
IlluminaHumanMethylation450kanno.ilmn12.hg19 (extension)
R library included as extension to the following
software installations:
IlluminaHumanMethylationEPICanno.ilm10b2.hg19 (extension)
R library included as extension to the following
software installations:
IlluminaHumanMethylationEPICanno.ilm10b4.hg19 (extension)
R library included as extension to the following
software installations:
conumee (extension)
R library included as extension to the following
software installations:
BSgenome.Cfamiliaris.UCSC.canFam3 (extension)
R library included as extension to the following
software installations:
ExperimentHub (extension)
R library included as extension to the following
software installations:
SingleR (extension)
R library included as extension to the following
software installations:
FlowSorted.Blood.EPIC (extension)
R library included as extension to the following
software installations:
FlowSorted.CordBloodCombined.450k (extension)
R library included as extension to the following
software installations:
DRIMSeq (extension)
R library included as extension to the following
software installations:
stageR (extension)
R library included as extension to the following
software installations:
isva (extension)
R library included as extension to the following
software installations:
org.Mm.eg.db (extension)
R library included as extension to the following
software installations:
org.Rn.eg.db (extension)
R library included as extension to the following
software installations:
ROC (extension)
R library included as extension to the following
software installations:
wateRmelon (extension)
R library included as extension to the following
software installations:
GLAD (extension)
R library included as extension to the following
software installations:
missMethyl (extension)
R library included as extension to the following
software installations:
MethylSeekR (extension)
R library included as extension to the following
software installations:
affxparser (extension)
R library included as extension to the following
software installations:
ccdata (extension)
R library included as extension to the following
software installations:
lsa (extension)
R library included as extension to the following
software installations:
ccmap (extension)
R library included as extension to the following
software installations:
oligo (extension)
R library included as extension to the following
software installations:
SMVar (extension)
R library included as extension to the following
software installations:
metaMA (extension)
R library included as extension to the following
software installations:
randomcoloR (extension)
R library included as extension to the following
software installations:
shinyBS (extension)
R library included as extension to the following
software installations:
shinypanel (extension)
R library included as extension to the following
software installations:
crossmeta (extension)
R library included as extension to the following
software installations:
snpStats (extension)
R library included as extension to the following
software installations:
mixsqp (extension)
R library included as extension to the following
software installations:
susieR (extension)
R library included as extension to the following
software installations:
coloc (extension)
R library included as extension to the following
software installations:
SCANVIS (extension)
R library included as extension to the following
software installations:
EnsDb.Hsapiens.v86 (extension)
R library included as extension to the following
software installations:
agricolae (extension)
R library included as extension to the following
software installations:
bookdown (extension)
R library included as extension to the following
software installations:
BiocStyle (extension)
R library included as extension to the following
software installations:
ggdendro (extension)
R library included as extension to the following
software installations:
pmp (extension)
R library included as extension to the following
software installations:
MultiDataSet (extension)
R library included as extension to the following
software installations:
BiocBaseUtils (extension)
R library included as extension to the following
software installations:
MultiAssayExperiment (extension)
R library included as extension to the following
software installations:
ropls (extension)
R library included as extension to the following
software installations:
ontologyIndex (extension)
R library included as extension to the following
software installations:
rols (extension)
R library included as extension to the following
software installations:
struct (extension)
R library included as extension to the following
software installations:
ggthemes (extension)
R library included as extension to the following
software installations:
structToolbox (extension)
R library included as extension to the following
software installations:
EnsDb.Hsapiens.v75 (extension)
R library included as extension to the following
software installations:
ggseqlogo (extension)
R library included as extension to the following
software installations:
sparsesvd (extension)
R library included as extension to the following
software installations:
docopt (extension)
R library included as extension to the following
software installations:
qlcMatrix (extension)
R library included as extension to the following
software installations:
Signac (extension)
R library included as extension to the following
software installations:
motifmatchr (extension)
R library included as extension to the following
software installations:
extraDistr (extension)
R library included as extension to the following
software installations:
PRROC (extension)
R library included as extension to the following
software installations:
TSP (extension)
R library included as extension to the following
software installations:
qap (extension)
R library included as extension to the following
software installations:
ca (extension)
R library included as extension to the following
software installations:
seriation (extension)
R library included as extension to the following
software installations:
egg (extension)
R library included as extension to the following
software installations:
heatmaply (extension)
R library included as extension to the following
software installations:
OUTRIDER (extension)
R library included as extension to the following
software installations:
FRASER (extension)
R library included as extension to the following
software installations:
JASPAR2020 (extension)
R library included as extension to the following
software installations:
AUCell (extension)
R library included as extension to the following
software installations:
RcisTarget (extension)
R library included as extension to the following
software installations:
NMF (extension)
R library included as extension to the following
software installations:
densEstBayes (extension)
R library included as extension to the following
software installations:
reldist (extension)
R library included as extension to the following
software installations:
M3Drop (extension)
R library included as extension to the following
software installations:
bsseq (extension)
R library included as extension to the following
software installations:
DSS (extension)
R library included as extension to the following
software installations:
pathview (extension)
R library included as extension to the following
software installations:
chromVAR (extension)
R library included as extension to the following
software installations:
EnsDb.Hsapiens.v79 (extension)
R library included as extension to the following
software installations:
WGCNA (extension)
R library included as extension to the following
software installations:
DNABarcodes (extension)
R library included as extension to the following
software installations:
CAGEr (extension)
R library included as extension to the following
software installations:
SPOTlight (extension)
R library included as extension to the following
software installations:
CGHcall (extension)
R library included as extension to the following
software installations:
QDNAseq (extension)
R library included as extension to the following
software installations:
HiCcompare (extension)
R library included as extension to the following
software installations:
ROntoTools (extension)
R library included as extension to the following
software installations:
scDblFinder (extension)
R library included as extension to the following
software installations:
treeio (extension)
R library included as extension to the following
software installations:
ggtree (extension)
R library included as extension to the following
software installations:
scistreer (extension)
R library included as extension to the following
software installations:
numbat (extension)
R library included as extension to the following
software installations:
HiCBricks (extension)
R library included as extension to the following
software installations:
dir.expiry (extension)
R library included as extension to the following
software installations:
basilisk.utils (extension)
R library included as extension to the following
software installations:
basilisk (extension)
R library included as extension to the following
software installations:
zellkonverter (extension)
R library included as extension to the following
software installations:
DO.db (extension)
R library included as extension to the following
software installations:
GOSemSim (extension)
R library included as extension to the following
software installations:
HDO.db (extension)
R library included as extension to the following
software installations:
DOSE (extension)
R library included as extension to the following
software installations:
enrichplot (extension)
R library included as extension to the following
software installations:
gson (extension)
R library included as extension to the following
software installations:
clusterProfiler (extension)
R library included as extension to the following
software installations:
reactome.db (extension)
R library included as extension to the following
software installations:
graphite (extension)
R library included as extension to the following
software installations:
ReactomePA (extension)
R library included as extension to the following
software installations:
flowClean (extension)
R library included as extension to the following
software installations:
flowAI (extension)
R library included as extension to the following
software installations:
flowFP (extension)
R library included as extension to the following
software installations:
simplifyEnrichment (extension)
R library included as extension to the following
software installations:
RPMG (extension)
R library included as extension to the following
software installations:
Rwave (extension)
R library included as extension to the following
software installations:
RSEIS (extension)
R library included as extension to the following
software installations:
splancs (extension)
R library included as extension to the following
software installations:
MBA (extension)
R library included as extension to the following
software installations:
GEOmap (extension)
R library included as extension to the following
software installations:
RFOC (extension)
R library included as extension to the following
software installations:
flowDensity (extension)
R library included as extension to the following
software installations:
flowPeaks (extension)
R library included as extension to the following
software installations:
SamSPECTRAL (extension)
R library included as extension to the following
software installations:
ddPCRclust (extension)
R library included as extension to the following
software installations:
feature (extension)
R library included as extension to the following
software installations:
flowMerge (extension)
R library included as extension to the following
software installations:
SpatialExperiment (extension)
R library included as extension to the following
software installations:
TrajectoryUtils (extension)
R library included as extension to the following
software installations:
slingshot (extension)
R library included as extension to the following
software installations:
TreeSummarizedExperiment (extension)
R library included as extension to the following
software installations:
decontam (extension)
R library included as extension to the following
software installations:
DECIPHER (extension)
R library included as extension to the following
software installations:
mia (extension)
R library included as extension to the following
software installations:
ANCOMBC (extension)
R library included as extension to the following
software installations:
decoupleR (extension)
R library included as extension to the following
software installations:
UCell (extension)
R library included as extension to the following
software installations:
intervals (extension)
R library included as extension to the following
software installations:
oompaBase (extension)
R library included as extension to the following
software installations:
oompaData (extension)
R library included as extension to the following
software installations:
TailRank (extension)
R library included as extension to the following
software installations:
RnBeads (extension)
R library included as extension to the following
software installations:
RnBeads.hg19 (extension)
R library included as extension to the following
software installations:
RnBeads.hg38 (extension)
R library included as extension to the following
software installations:
RnBeads.mm9 (extension)
R library included as extension to the following
software installations:
RnBeads.mm10 (extension)
R library included as extension to the following
software installations:
RnBeads.rn5 (extension)
R library included as extension to the following
software installations:
log4r (extension)
R library included as extension to the following
software installations:
MSstatsConvert (extension)
R library included as extension to the following
software installations:
MSstats (extension)
R library included as extension to the following
software installations:
MSstatsTMT (extension)
R library included as extension to the following
software installations:
MSstatsPTM (extension)
R library included as extension to the following
software installations:
factoextra (extension)
R library included as extension to the following
software installations:
MSstatsLiP (extension)
R library included as extension to the following
software installations:
babelgene (extension)
R library included as extension to the following
software installations:
msigdbr (extension)
R library included as extension to the following
software installations:
escape (extension)
R library included as extension to the following
software installations:
S4Arrays (extension)
R library included as extension to the following
software installations:
SparseArray (extension)
R library included as extension to the following
software installations:
directlabels (extension)
R library included as extension to the following
software installations:
MetaboCoreUtils (extension)
R library included as extension to the following
software installations:
Spectra (extension)
R library included as extension to the following
software installations:
QFeatures (extension)
R library included as extension to the following
software installations:
MsExperiment (extension)
R library included as extension to the following
software installations:
fANCOVA (extension)
R library included as extension to the following
software installations:
GenomicInteractions (extension)
R library included as extension to the following
software installations:
CAGEfightR (extension)
R library included as extension to the following
software installations:
plyranges (extension)
R library included as extension to the following
software installations:
seqPattern (extension)
R library included as extension to the following
software installations:
genomation (extension)
R library included as extension to the following
software installations:
ChIPseeker (extension)
R library included as extension to the following
software installations:
SimBu (extension)
R library included as extension to the following
software installations:
UCSC.utils (extension)
R library included as extension to the following
software installations:
pwalign (extension)
R library included as extension to the following
software installations:
txdbmaker (extension)
R library included as extension to the following
software installations:
gsignal (extension)
R library included as extension to the following
software installations:
assorthead (extension)
R library included as extension to the following
software installations:
PSMatch (extension)
R library included as extension to the following
software installations:
universalmotif (extension)
R library included as extension to the following
software installations:
IlluminaHumanMethylationEPICv2manifest (extension)
R library included as extension to the following
software installations:
IlluminaHumanMethylationEPICv2anno.20a1.hg38 (extension)
R library included as extension to the following
software installations:
hahmmr (extension)
R library included as extension to the following
software installations:
ggtangle (extension)
R library included as extension to the following
software installations:
simona (extension)
R library included as extension to the following
software installations:
rbiom (extension)
R library included as extension to the following
software installations:
hiAnnotator (extension)
R library included as extension to the following
software installations:
lefser (extension)
R library included as extension to the following
software installations:
Maaslin2 (extension)
R library included as extension to the following
software installations:
ggpicrust2 (extension)
R library included as extension to the following
software installations:
ggstats (extension)
R library included as extension to the following
software installations:
writexl (extension)
R library included as extension to the following
software installations:
ConsRank (extension)
R library included as extension to the following
software installations:
chk (extension)
R library included as extension to the following
software installations:
ergm.multi (extension)
R library included as extension to the following
software installations:
QuickJSR (extension)
R library included as extension to the following
software installations:
RPostgreSQL (extension)
R library included as extension to the following
software installations:
BIEN (extension)
R library included as extension to the following
software installations:
reactR (extension)
R library included as extension to the following
software installations:
reactable (extension)
R library included as extension to the following
software installations:
ggdist (extension)
R library included as extension to the following
software installations:
svUnit (extension)
R library included as extension to the following
software installations:
arrayhelpers (extension)
R library included as extension to the following
software installations:
tidybayes (extension)
R library included as extension to the following
software installations:
spdep (extension)
R library included as extension to the following
software installations:
stringmagic (extension)
R library included as extension to the following
software installations:
dreamerr (extension)
R library included as extension to the following
software installations:
fixest (extension)
R library included as extension to the following
software installations:
cmna (extension)
R library included as extension to the following
software installations:
XBRL (extension)
R library included as extension to the following
software installations:
rhandsontable (extension)
R library included as extension to the following
software installations:
missMDA (extension)
R library included as extension to the following
software installations:
multitaper (extension)
R library included as extension to the following
software installations:
PKI (extension)
R library included as extension to the following
software installations:
minty (extension)
R library included as extension to the following
software installations:
insight (extension)
R library included as extension to the following
software installations:
datawizard (extension)
R library included as extension to the following
software installations:
bayestestR (extension)
R library included as extension to the following
software installations:
performance (extension)
R library included as extension to the following
software installations:
cards (extension)
R library included as extension to the following
software installations:
doBy (extension)
R library included as extension to the following
software installations:
spatstat.univar (extension)
R library included as extension to the following
software installations:
reformulas (extension)
R library included as extension to the following
software installations:
kableExtra (extension)
R library included as extension to the following
software installations:
qrng (extension)
R library included as extension to the following
software installations:
spacefillr (extension)
R library included as extension to the following
software installations:
beepr (extension)
R library included as extension to the following
software installations:
RPushbullet (extension)
R library included as extension to the following
software installations:
SimDesign (extension)
R library included as extension to the following
software installations:
fastlogranktest (extension)
R library included as extension to the following
software installations:
pbmcapply (extension)
R library included as extension to the following
software installations:
PWEALL (extension)
R library included as extension to the following
software installations:
goldilocks (extension)
R library included as extension to the following
software installations:
r2rtf (extension)
R library included as extension to the following
software installations:
gsDesign (extension)
R library included as extension to the following
software installations:
gcmr (extension)
R library included as extension to the following
software installations:
frbs (extension)
R library included as extension to the following
software installations:
pander (extension)
R library included as extension to the following
software installations:
texreg (extension)
R library included as extension to the following
software installations:
gsubfn (extension)
R library included as extension to the following
software installations:
fastGHQuad (extension)
R library included as extension to the following
software installations:
MplusAutomation (extension)
R library included as extension to the following
software installations:
modsem (extension)
R library included as extension to the following
software installations:
sgdGMF (extension)
R library included as extension to the following
software installations:
statip (extension)
R library included as extension to the following
software installations:
gss (extension)
R library included as extension to the following
software installations:
timeSeries (extension)
R library included as extension to the following
software installations:
fBasics (extension)
R library included as extension to the following
software installations:
rmutil (extension)
R library included as extension to the following
software installations:
stable (extension)
R library included as extension to the following
software installations:
modeest (extension)
R library included as extension to the following
software installations:
MicrobiomeStat (extension)
R library included as extension to the following
software installations:
ggprism (extension)
R library included as extension to the following
software installations:
logging (extension)
R library included as extension to the following
software installations:
biglm (extension)
R library included as extension to the following
software installations:
cplm (extension)
R library included as extension to the following
software installations:
rdflib (extension)
Python package included as extension to the following
software installations:
PySocks (extension)
Python package included as extension to the following
software installations:
rmextract (extension)
Python package included as extension to the following
software installations:
reframe (extension)
Python package included as extension to the following
software installations:
ffi (extension)
included as extension to the following
software installations:
childprocess (extension)
included as extension to the following
software installations:
json (extension)
included as extension to the following
software installations:
cabin (extension)
included as extension to the following
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backports (extension)
included as extension to the following
software installations:
arr-pm (extension)
included as extension to the following
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clamp (extension)
included as extension to the following
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multipart-post (extension)
included as extension to the following
software installations:
ruby2_keywords (extension)
included as extension to the following
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faraday-net_http (extension)
included as extension to the following
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faraday (extension)
included as extension to the following
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faraday_middleware (extension)
included as extension to the following
software installations:
highline (extension)
included as extension to the following
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net-http-pipeline (extension)
included as extension to the following
software installations:
connection_pool (extension)
included as extension to the following
software installations:
net-http-persistent (extension)
included as extension to the following
software installations:
multi_json (extension)
included as extension to the following
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public_suffix (extension)
included as extension to the following
software installations:
addressable (extension)
included as extension to the following
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concurrent-ruby (extension)
included as extension to the following
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i18n (extension)
included as extension to the following
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minitest (extension)
included as extension to the following
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thread_safe (extension)
included as extension to the following
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tzinfo (extension)
included as extension to the following
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zeitwerk (extension)
included as extension to the following
software installations:
activesupport (extension)
included as extension to the following
software installations:
gh (extension)
included as extension to the following
software installations:
launchy (extension)
included as extension to the following
software installations:
ethon (extension)
included as extension to the following
software installations:
typhoeus (extension)
included as extension to the following
software installations:
websocket (extension)
included as extension to the following
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pusher-client (extension)
included as extension to the following
software installations:
diff-lcs (extension)
included as extension to the following
software installations:
rspec-support (extension)
included as extension to the following
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rspec-mocks (extension)
included as extension to the following
software installations:
rspec-expectations (extension)
included as extension to the following
software installations:
rspec-core (extension)
included as extension to the following
software installations:
rspec (extension)
included as extension to the following
software installations:
rack (extension)
included as extension to the following
software installations:
rack-protection (extension)
included as extension to the following
software installations:
tilt (extension)
included as extension to the following
software installations:
mustermann (extension)
included as extension to the following
software installations:
sinatra (extension)
included as extension to the following
software installations:
rack-test (extension)
included as extension to the following
software installations:
bundler (extension)
included as extension to the following
software installations:
greenlet (extension)
Python package included as extension to the following
software installations:
async-timeout (extension)
Python package included as extension to the following
software installations:
asyncpg (extension)
Python package included as extension to the following
software installations:
SQLAlchemy (extension)
Python package included as extension to the following
software installations:
sqlalchemy (extension)
Python package included as extension to the following
software installations:
numpy (extension)
Python package included as extension to the following
software installations:
ply (extension)
Python package included as extension to the following
software installations:
gast (extension)
Python package included as extension to the following
software installations:
beniget (extension)
Python package included as extension to the following
software installations:
pythran (extension)
Python package included as extension to the following
software installations:
scipy (extension)
Python package included as extension to the following
software installations:
numexpr (extension)
Python package included as extension to the following
software installations:
Bottleneck (extension)
Python package included as extension to the following
software installations:
pandas (extension)
Python package included as extension to the following
software installations:
mpmath (extension)
Python package included as extension to the following
software installations:
deap (extension)
Python package included as extension to the following
software installations:
versioneer (extension)
Python package included as extension to the following
software installations:
tzdata (extension)
Python package included as extension to the following
software installations:
bottleneck (extension)
Python package included as extension to the following
software installations:
antlr4-python3-runtime (extension)
Python package included as extension to the following
software installations:
cf-units (extension)
Python package included as extension to the following
software installations:
scitools_iris (extension)
Python package included as extension to the following
software installations:
plotext (extension)
Python package included as extension to the following
software installations:
textual (extension)
Python package included as extension to the following
software installations:
textual-plotext (extension)
Python package included as extension to the following
software installations:
asyncssh (extension)
Python package included as extension to the following
software installations:
slurm-viewer (extension)
Python package included as extension to the following
software installations:
wrapt (extension)
Python package included as extension to the following
software installations:
termcolor (extension)
Python package included as extension to the following
software installations:
tensorflow-estimator (extension)
Python package included as extension to the following
software installations:
tensorboard-plugin-wit (extension)
Python package included as extension to the following
software installations:
tensorboard-data-server (extension)
Python package included as extension to the following
software installations:
grpcio (extension)
Python package included as extension to the following
software installations:
oauthlib (extension)
Python package included as extension to the following
software installations:
requests-oauthlib (extension)
Python package included as extension to the following
software installations:
google-auth-oauthlib (extension)
Python package included as extension to the following
software installations:
absl-py (extension)
Python package included as extension to the following
software installations:
tensorboard (extension)
Python package included as extension to the following
software installations:
opt-einsum (extension)
Python package included as extension to the following
software installations:
keras (extension)
Python package included as extension to the following
software installations:
google-pasta (extension)
Python package included as extension to the following
software installations:
astunparse (extension)
Python package included as extension to the following
software installations:
portpicker (extension)
Python package included as extension to the following
software installations:
tblib (extension)
Python package included as extension to the following
software installations:
astor (extension)
Python package included as extension to the following
software installations:
gviz-api (extension)
Python package included as extension to the following
software installations:
tensorboard-plugin-profile (extension)
Python package included as extension to the following
software installations:
TensorFlow (extension)
Python package included as extension to the following
software installations:
pyfaidx (extension)
Python package included as extension to the following
software installations:
mappy (extension)
Python package included as extension to the following
software installations:
ont-tombo (extension)
Python package included as extension to the following
software installations:
geometric (extension)
Python package included as extension to the following
software installations:
VeloxChem (extension)
Python package included as extension to the following
software installations:
wayland (extension)
included as extension to the following
software installations:
wayland-protocols (extension)
included as extension to the following
software installations:
wayland-utils (extension)
included as extension to the following
software installations:
xopen (extension)
Python package included as extension to the following
software installations:
pulp (extension)
Python package included as extension to the following
software installations:
WhatsHap (extension)
Python package included as extension to the following
software installations:
PuLP (extension)
Python package included as extension to the following
software installations:
whatshap (extension)
Python package included as extension to the following
software installations:
libpthread-stubs (extension)
included as extension to the following
software installations:
xorgproto (extension)
included as extension to the following
software installations:
libXau (extension)
included as extension to the following
software installations:
libXdmcp (extension)
included as extension to the following
software installations:
xcb-proto (extension)
included as extension to the following
software installations:
libxcb (extension)
included as extension to the following
software installations:
xtrans (extension)
included as extension to the following
software installations:
libxkbcommon (extension)
included as extension to the following
software installations:
libX11 (extension)
included as extension to the following
software installations:
libXext (extension)
included as extension to the following
software installations:
libFS (extension)
included as extension to the following
software installations:
libICE (extension)
included as extension to the following
software installations:
libSM (extension)
included as extension to the following
software installations:
libXScrnSaver (extension)
included as extension to the following
software installations:
libXt (extension)
included as extension to the following
software installations:
libXmu (extension)
included as extension to the following
software installations:
libXpm (extension)
included as extension to the following
software installations:
libXaw (extension)
included as extension to the following
software installations:
libXfixes (extension)
included as extension to the following
software installations:
libXcomposite (extension)
included as extension to the following
software installations:
libXrender (extension)
included as extension to the following
software installations:
libXcursor (extension)
included as extension to the following
software installations:
libXdamage (extension)
included as extension to the following
software installations:
libfontenc (extension)
included as extension to the following
software installations:
libXfont (extension)
included as extension to the following
software installations:
libXfont2 (extension)
included as extension to the following
software installations:
libXft (extension)
included as extension to the following
software installations:
libXi (extension)
included as extension to the following
software installations:
libXinerama (extension)
included as extension to the following
software installations:
libXrandr (extension)
included as extension to the following
software installations:
libXres (extension)
included as extension to the following
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libXtst (extension)
included as extension to the following
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libXv (extension)
included as extension to the following
software installations:
libXvMC (extension)
included as extension to the following
software installations:
libXxf86dga (extension)
included as extension to the following
software installations:
libXxf86vm (extension)
included as extension to the following
software installations:
libdmx (extension)
included as extension to the following
software installations:
libxkbfile (extension)
included as extension to the following
software installations:
libxshmfence (extension)
included as extension to the following
software installations:
xcb-util (extension)
included as extension to the following
software installations:
xcb-util-image (extension)
included as extension to the following
software installations:
xcb-util-keysyms (extension)
included as extension to the following
software installations:
xcb-util-renderutil (extension)
included as extension to the following
software installations:
xcb-util-wm (extension)
included as extension to the following
software installations:
xcb-util-cursor (extension)
included as extension to the following
software installations:
xkeyboard-config (extension)
included as extension to the following
software installations:
printproto (extension)
included as extension to the following
software installations:
libXp (extension)
included as extension to the following
software installations:
xbitmaps (extension)
included as extension to the following
software installations:
iceauth (extension)
included as extension to the following
software installations:
libXpresent (extension)
included as extension to the following
software installations:
File::chdir (extension)
Perl module included as extension to the following
software installations:
Alien::Base (extension)
Perl module included as extension to the following
software installations:
Alien::Build::Plugin::Download::GitLab (extension)
Perl module included as extension to the following
software installations:
Alien::Libxml2 (extension)
Perl module included as extension to the following
software installations:
XML::LibXML (extension)
Perl module included as extension to the following
software installations:
mkfontscale (extension)
included as extension to the following
software installations:
mkfontdir (extension)
included as extension to the following
software installations:
bdftopcf (extension)
included as extension to the following
software installations:
font-util (extension)
included as extension to the following
software installations:
font-misc-misc (extension)
included as extension to the following
software installations:
xkbcomp (extension)
included as extension to the following
software installations:
xauth (extension)
included as extension to the following
software installations:
libxcvt (extension)
included as extension to the following
software installations:
Xvfb (extension)
included as extension to the following
software installations:
z3-solver (extension)
Python package included as extension to the following
software installations:
z3_solver (extension)
Python package included as extension to the following
software installations:
disk_objectstore (extension)
Python package included as extension to the following
software installations:
tqdm (extension)
Python package included as extension to the following
software installations:
docstring_parser (extension)
Python package included as extension to the following
software installations:
upf-to-json (extension)
Python package included as extension to the following
software installations:
circus (extension)
Python package included as extension to the following
software installations:
click-spinner (extension)
Python package included as extension to the following
software installations:
pytray (extension)
Python package included as extension to the following
software installations:
pgsu (extension)
Python package included as extension to the following
software installations:
archive-path (extension)
Python package included as extension to the following
software installations:
graphviz (extension)
Python package included as extension to the following
software installations:
aniso8601 (extension)
Python package included as extension to the following
software installations:
Flask-RESTful (extension)
Python package included as extension to the following
software installations:
python-memcached (extension)
Python package included as extension to the following
software installations:
PyMySQL (extension)
Python package included as extension to the following
software installations:
PyCifRW (extension)
Python package included as extension to the following
software installations:
seekpath (extension)
Python package included as extension to the following
software installations:
aiida-core (extension)
Python package included as extension to the following
software installations:
aiida-shell (extension)
Python package included as extension to the following
software installations:
multidict (extension)
Python package included as extension to the following
software installations:
yarl (extension)
Python package included as extension to the following
software installations:
frozenlist (extension)
Python package included as extension to the following
software installations:
aiohttp (extension)
Python package included as extension to the following
software installations:
aiosignal (extension)
Python package included as extension to the following
software installations:
array_api_compat (extension)
Python package included as extension to the following
software installations:
natsort (extension)
Python package included as extension to the following
software installations:
anndata (extension)
Python package included as extension to the following
software installations:
colorlog (extension)
Python package included as extension to the following
software installations:
pyerfa (extension)
Python package included as extension to the following
software installations:
extension-helpers (extension)
Python package included as extension to the following
software installations:
astropy-iers-data (extension)
Python package included as extension to the following
software installations:
astropy (extension)
Python package included as extension to the following
software installations:
pytest-doctestplus (extension)
Python package included as extension to the following
software installations:
pytest-astropy-header (extension)
Python package included as extension to the following
software installations:
pytest-remotedata (extension)
Python package included as extension to the following
software installations:
pytest-arraydiff (extension)
Python package included as extension to the following
software installations:
pytest-filter-subpackage (extension)
Python package included as extension to the following
software installations:
pytest-cov (extension)
Python package included as extension to the following
software installations:
pytest-astropy (extension)
Python package included as extension to the following
software installations:
attrdict3 (extension)
Python package included as extension to the following
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basemap_data (extension)
Python package included as extension to the following
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basemap (extension)
Python package included as extension to the following
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tornado (extension)
Python package included as extension to the following
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contourpy (extension)
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xyzservices (extension)
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bokeh (extension)
Python package included as extension to the following
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botocore (extension)
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jmespath (extension)
Python package included as extension to the following
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s3transfer (extension)
Python package included as extension to the following
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boto3 (extension)
Python package included as extension to the following
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pyproject_hooks (extension)
Python package included as extension to the following
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build (extension)
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asciitree (extension)
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toolz (extension)
Python package included as extension to the following
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cytoolz (extension)
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cooler (extension)
Python package included as extension to the following
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coverage (extension)
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facade (extension)
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pathname2 (extension)
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fixwhich (extension)
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bindeps (extension)
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bio (extension)
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threach (extension)
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trollop (extension)
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crb-blast (extension)
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dnaio (extension)
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cutadapt (extension)
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mypy-extensions (extension)
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schema-salad (extension)
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prov (extension)
Python package included as extension to the following
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argcomplete (extension)
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cwl-upgrader (extension)
Python package included as extension to the following
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spython (extension)
Python package included as extension to the following
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rich-argparse (extension)
Python package included as extension to the following
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cwl-utils (extension)
Python package included as extension to the following
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cwltool (extension)
Python package included as extension to the following
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locket (extension)
Python package included as extension to the following
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partd (extension)
Python package included as extension to the following
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HeapDict (extension)
Python package included as extension to the following
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zict (extension)
Python package included as extension to the following
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dask (extension)
Python package included as extension to the following
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distributed (extension)
Python package included as extension to the following
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dask-mpi (extension)
Python package included as extension to the following
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docrep (extension)
Python package included as extension to the following
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dask-jobqueue (extension)
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flit-scm (extension)
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typing-extensions (extension)
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mapclassify (extension)
Python package included as extension to the following
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geopandas (extension)
Python package included as extension to the following
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proto-plus (extension)
Python package included as extension to the following
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google-api-core (extension)
Python package included as extension to the following
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google-crc32c (extension)
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google-resumable-media (extension)
Python package included as extension to the following
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googleapis-common-protos (extension)
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google-cloud-core (extension)
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google-cloud-storage (extension)
Python package included as extension to the following
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h5netcdf (extension)
Python package included as extension to the following
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hatch_nodejs_version (extension)
Python package included as extension to the following
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hatch_jupyter_builder (extension)
Python package included as extension to the following
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trove_classifiers (extension)
Python package included as extension to the following
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hatch-requirements-txt (extension)
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trove-classifiers (extension)
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hatch-vcs (extension)
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hatch-fancy-pypi-readme (extension)
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hatch-docstring-description (extension)
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ipympl (extension)
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websocket-client (extension)
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terminado (extension)
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Send2Trash (extension)
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prometheus_client (extension)
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overrides (extension)
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arrow (extension)
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jupyter_server_terminals (extension)
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rfc3986_validator (extension)
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rfc3339_validator (extension)
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rpds_py (extension)
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python-json-logger (extension)
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jsonschema_specifications (extension)
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jupyter_events (extension)
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argon2-cffi-bindings (extension)
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argon2_cffi (extension)
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jupyter_server (extension)
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notebook_shim (extension)
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nest_asyncio (extension)
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ipykernel (extension)
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ipython_genutils (extension)
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debugpy (extension)
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websocket_client (extension)
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jupyterlmod (extension)
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soxr (extension)
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audioread (extension)
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soundfile (extension)
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lazy_loader (extension)
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resampy (extension)
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librosa (extension)
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lit (extension)
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fonttools (extension)
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Cycler (extension)
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kiwisolver (extension)
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matplotlib (extension)
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cycler (extension)
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pyproject-metadata (extension)
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meson-python (extension)
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opt_einsum (extension)
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etils (extension)
Python package included as extension to the following
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ml_dtypes (extension)
Python package included as extension to the following
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mpi4py (extension)
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mpl-ascii (extension)
Python package included as extension to the following
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cftime (extension)
Python package included as extension to the following
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netcdf4-python (extension)
Python package included as extension to the following
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llvmlite (extension)
Python package included as extension to the following
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numba (extension)
Python package included as extension to the following
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ggml-cpu (extension)
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ollama (extension)
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ruff (extension)
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mypy_extensions (extension)
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mypy (extension)
Python package included as extension to the following
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orjson (extension)
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tenacity (extension)
Python package included as extension to the following
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plotly (extension)
Python package included as extension to the following
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aio-pika (extension)
Python package included as extension to the following
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aiormq (extension)
Python package included as extension to the following
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kiwipy (extension)
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nest-asyncio (extension)
Python package included as extension to the following
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pamqp (extension)
Python package included as extension to the following
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plumpy (extension)
Python package included as extension to the following
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installer (extension)
Python package included as extension to the following
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poetry_core (extension)
Python package included as extension to the following
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poetry-plugin-export (extension)
Python package included as extension to the following
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charset_normalizer (extension)
Python package included as extension to the following
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findpython (extension)
Python package included as extension to the following
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pbs_installer (extension)
Python package included as extension to the following
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more_itertools (extension)
Python package included as extension to the following
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nodeenv (extension)
Python package included as extension to the following
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identify (extension)
Python package included as extension to the following
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cfgv (extension)
Python package included as extension to the following
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pre-commit (extension)
Python package included as extension to the following
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psycopg (extension)
Python package included as extension to the following
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psycopg2 (extension)
Python package included as extension to the following
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pyMBE (extension)
Python package included as extension to the following
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looseversion (extension)
Python package included as extension to the following
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Pint-Pandas (extension)
Python package included as extension to the following
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biopandas (extension)
Python package included as extension to the following
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annotated_types (extension)
Python package included as extension to the following
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pydantic_core (extension)
Python package included as extension to the following
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pydantic (extension)
Python package included as extension to the following
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pydot (extension)
Python package included as extension to the following
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palettable (extension)
Python package included as extension to the following
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latexcodec (extension)
Python package included as extension to the following
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pybtex (extension)
Python package included as extension to the following
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sshtunnel (extension)
Python package included as extension to the following
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dnspython (extension)
Python package included as extension to the following
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pymongo (extension)
Python package included as extension to the following
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pydash (extension)
Python package included as extension to the following
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python-dotenv (extension)
Python package included as extension to the following
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pydantic-settings (extension)
Python package included as extension to the following
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emmet-core (extension)
Python package included as extension to the following
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monty (extension)
Python package included as extension to the following
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sentinels (extension)
Python package included as extension to the following
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mongomock (extension)
Python package included as extension to the following
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mongogrant (extension)
Python package included as extension to the following
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aioitertools (extension)
Python package included as extension to the following
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maggma (extension)
Python package included as extension to the following
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mp-api (extension)
Python package included as extension to the following
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pymatgen (extension)
Python package included as extension to the following
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pystencils (extension)
Python package included as extension to the following
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elementpath (extension)
Python package included as extension to the following
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xmlschema (extension)
Python package included as extension to the following
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python-casacore (extension)
Python package included as extension to the following
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xxhash (extension)
Python package included as extension to the following
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redis-py (extension)
Python package included as extension to the following
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tzlocal (extension)
Python package included as extension to the following
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rpy2 (extension)
Python package included as extension to the following
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ruamel.yaml.clib (extension)
Python package included as extension to the following
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ruamel.yaml (extension)
Python package included as extension to the following
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configobj (extension)
Python package included as extension to the following
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lz4 (extension)
Python package included as extension to the following
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ruamel.yaml.base (extension)
Python package included as extension to the following
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ruamel.yaml.convert (extension)
Python package included as extension to the following
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ruamel.yaml.cmd (extension)
Python package included as extension to the following
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ruamel.yaml.jinja2 (extension)
Python package included as extension to the following
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scCODA (extension)
Python package included as extension to the following
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stdlib_list (extension)
Python package included as extension to the following
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session-info (extension)
Python package included as extension to the following
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legacy_api_wrap (extension)
Python package included as extension to the following
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scanpy (extension)
Python package included as extension to the following
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hdmedians (extension)
Python package included as extension to the following
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scikit-bio (extension)
Python package included as extension to the following
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scikit_build (extension)
Python package included as extension to the following
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scikit-build (extension)
Python package included as extension to the following
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scikit_build_core (extension)
Python package included as extension to the following
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scikit-learn (extension)
Python package included as extension to the following
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sklearn (extension)
Python package included as extension to the following
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datrie (extension)
Python package included as extension to the following
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plac (extension)
Python package included as extension to the following
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dpath (extension)
Python package included as extension to the following
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yte (extension)
Python package included as extension to the following
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toposort (extension)
Python package included as extension to the following
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throttler (extension)
Python package included as extension to the following
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stopit (extension)
Python package included as extension to the following
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ConfigArgParse (extension)
Python package included as extension to the following
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argparse-dataclass (extension)
Python package included as extension to the following
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snakemake-interface-common (extension)
Python package included as extension to the following
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reretry (extension)
Python package included as extension to the following
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snakemake-interface-storage-plugins (extension)
Python package included as extension to the following
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snakemake-interface-report-plugins (extension)
Python package included as extension to the following
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snakemake-interface-executor-plugins (extension)
Python package included as extension to the following
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smart-open (extension)
Python package included as extension to the following
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jupyter-core (extension)
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immutables (extension)
Python package included as extension to the following
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connection-pool (extension)
Python package included as extension to the following
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conda-inject (extension)
Python package included as extension to the following
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snakemake (extension)
Python package included as extension to the following
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snakemake-executor-plugin-slurm-jobstep (extension)
Python package included as extension to the following
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snakemake-executor-plugin-flux (extension)
Python package included as extension to the following
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snakemake-executor-plugin-slurm (extension)
Python package included as extension to the following
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snakemake-executor-plugin-cluster-sync (extension)
Python package included as extension to the following
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snakemake-executor-plugin-cluster-generic (extension)
Python package included as extension to the following
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spglib (extension)
Python package included as extension to the following
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pyproject_metadata (extension)
Python package included as extension to the following
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patsy (extension)
Python package included as extension to the following
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statsmodels (extension)
Python package included as extension to the following
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tblite (extension)
Python package included as extension to the following
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pyasn1_modules (extension)
Python package included as extension to the following
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tensorboard_data_server (extension)
Python package included as extension to the following
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google_auth (extension)
Python package included as extension to the following
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tensorflow-probability (extension)
Python package included as extension to the following
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addict (extension)
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blessed (extension)
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prefixed (extension)
Python package included as extension to the following
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enlighten (extension)
Python package included as extension to the following
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PyPubSub (extension)
Python package included as extension to the following
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configargparse (extension)
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boltons (extension)
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repoze.lru (extension)
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Routes (extension)
Python package included as extension to the following
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zipstream-new (extension)
Python package included as extension to the following
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galaxy-util (extension)
Python package included as extension to the following
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zstandard (extension)
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conda-package-streaming (extension)
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galaxy-tool-util (extension)
Python package included as extension to the following
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toil (extension)
Python package included as extension to the following
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pynndescent (extension)
Python package included as extension to the following
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umap-learn (extension)
Python package included as extension to the following
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jwcrypto (extension)
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websockify (extension)
Python package included as extension to the following
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cmweather (extension)
Python package included as extension to the following
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lat_lon_parser (extension)
Python package included as extension to the following
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xarray-datatree (extension)
Python package included as extension to the following
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xmltodict (extension)
Python package included as extension to the following
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xradar (extension)
Python package included as extension to the following
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wradlib (extension)
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cf_xarray (extension)
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sparse (extension)
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xesmf (extension)
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xarray (extension)
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Last update: 2026-02-10T02:29:36.868899Z