List of supported software¶
(quick links: 0 - a - b - c - d - e - f - g - h - i - j - k - l - m - n - o - p - q - r - s - t - u - v - w - x - y - z)
EasyBuild supports 3656 different software packages (incl. toolchains, bundles):
- 0
- a
- ABAQUS
- ABINIT
- ABRA2
- ABRicate
- Abseil
- absl-py
- abTEM
- ABySS
- accelerate
- ack
- ACTC
- ada
- AdapterRemoval
- ADDA
- ADF
- ADIOS
- adjustText
- ADMIXTURE
- ADOL-C
- Advisor
- AEDT
- affinity
- affogato
- AFNI
- AGAT
- AGeNT
- AGFusion
- AICSImageIO
- AIMAll
- aiohttp
- ALADIN
- ALAMODE
- Albacore
- Albumentations
- alevin-fry
- ALFA
- Alfred
- ALL
- alleleCount
- alleleIntegrator
- Allinea
- ALLPATHS-LG
- almosthere
- Alpha
- AlphaFold
- AlphaPulldown
- ALPS
- alsa-lib
- AMAPVox
- Amara
- amask
- Amber
- AmberMini
- AmberTools
- AMD-LibM
- AMD-RNG
- AMD-SecureRNG
- AMD-uProf
- amdahl
- AMGX
- AMICA
- AMOS
- AMPHORA2
- AMPL-MP
- amplimap
- AMPtk
- AMRFinderPlus
- AmrPlusPlus
- AMS
- Anaconda2
- Anaconda3
- anadama2
- aNCI
- andi
- ANGEL
- angsd
- ANIcalculator
- anndata
- Annif
- Annocript
- annovar
- ANSYS
- ANSYS_CFD
- ant
- ANTIC
- antiSMASH
- ANTLR
- ANTs
- anvio
- any2fasta
- AOCC
- AOFlagger
- AOMP
- APBS
- apex
- APOST3D
- APR
- APR-util
- AptaSUITE
- ARAGORN
- Arb
- Arcade-Learning-Environment
- arcasHLA
- ARCH
- Archive-Zip
- ArchR
- archspec
- AreTomo2
- ARGoS
- argtable
- aria2
- Arlequin
- Armadillo
- arosics
- ARPACK++
- arpack-ng
- ArrayFire
- Arriba
- Arrow
- arrow-R
- ART
- Artemis
- artic-ncov2019
- ARTS
- ArviZ
- ARWEN
- ASAP
- ASAP3
- ASCAT
- ASE
- ASF-SearchAPI
- ASHS
- Aspera-CLI
- Aspera-Connect
- assembly-stats
- assimp
- Assimulo
- ASTRID
- astro-tulips
- astropy
- at-spi2-atk
- at-spi2-core
- ATAT
- ATK
- ATLAS
- atomate
- AtomPAW
- atools
- atropos
- ATSAS
- attr
- attrdict
- attrdict3
- augur
- AUGUSTUS
- Austin
- AUTO-07p
- Autoconf
- Autoconf-archive
- AutoDock
- AutoDock-GPU
- AutoDock-Vina
- AutoDockSuite
- AutoGeneS
- AutoGrid
- Automake
- AutoMap
- autopep8
- Autotools
- Avogadro2
- avro-cpp
- awscli
- Ax
- axel
- b
- BA3-SNPS-autotune
- BabelStream
- babl
- Bader
- BAGEL
- BAli-Phy
- bam-readcount
- Bambi
- bamFilters
- BAMM
- BAMSurgeon
- bamtofastq
- BamTools
- BamUtil
- Bandage
- barrnap
- basemap
- bases2fastq
- Bash
- bashplotlib
- bat
- batchgenerators
- BatMeth2
- BayesAss
- BayesAss3-SNPs
- BayeScan
- BayeScEnv
- bayesian-optimization
- BayesOpt
- BayesPrism
- BayesTraits
- Bazel
- bbcp
- bbFTP
- BBMap
- bc
- BCALM
- bcbio-gff
- BCEL
- BCFtools
- bcgTree
- bcl-convert
- bcl2fastq2
- bcolz
- bcrypt
- BDBag
- Beagle
- beagle-lib
- Beast
- BeautifulSoup
- BEDOPS
- BEDTools
- BEEF
- behave
- bench
- BerkeleyGW
- BFAST
- BFC
- BGC-Bayesian-genomic-clines
- BgeeCall
- BgeeDB
- bgen
- BGEN-enkre
- bgen-reader
- BiasAdjustCXX
- bibtexparser
- BiG-SCAPE
- BigDFT
- BinSanity
- binutils
- Bio-DB-HTS
- Bio-EUtilities
- Bio-FeatureIO
- Bio-SamTools
- Bio-SearchIO-hmmer
- bioawk
- biobakery-workflows
- biobambam2
- biogeme
- biom-format
- biomart-perl
- BioPerl
- BioPP
- Biopython
- BioServices
- BirdNET
- biscuit
- Bismark
- Bison
- bitarray
- bitsandbytes
- bitshuffle
- BLACS
- BLASR
- blasr_libcpp
- BLAST
- BLAST+
- BLAT
- Blender
- BLIS
- bliss
- Blitz++
- BlobTools
- Block
- Blosc
- Blosc2
- BLT
- bmtagger
- BMTK
- bnpy
- BOINC
- bokeh
- BoltzTraP
- BoltzTraP2
- Bonito
- Bonmin
- Bonnie++
- Boost
- Boost.MPI
- Boost.Python
- Boost.Python-NumPy
- boost_histogram
- BOPTEST
- boto3
- Bottleneck
- Bowtie
- Bowtie2
- Bpipe
- bpp
- bpytop
- Bracken
- Braindecode
- BRAKER
- BreakDancer
- breseq
- BRiAl
- Brotli
- Brotli-python
- Brunsli
- bsddb3
- BSMAPz
- Bsoft
- BSseeker2
- btllib
- BuDDy
- BUFRLIB
- build
- buildenv
- buildingspy
- Bullet
- BUSCO
- BUStools
- BWA
- bwa-mem2
- bwa-meth
- bwakit
- bwidget
- BWISE
- bx-python
- BXH_XCEDE_TOOLS
- byacc
- byobu
- bzip2
- c
- c-ares
- C3D
- cadaver
- CaDiCaL
- CAFE5
- Caffe
- cairo
- cairomm
- Calcam
- CalculiX-CrunchiX
- Calendrical
- Calib
- CAMPARI
- Cantera
- canu
- Canvas
- CAP3
- CapnProto
- captum
- Cargo
- Carma
- carputils
- Cartopy
- CASA
- casacore
- Casanovo
- CaSpER
- CASPR
- Cassiopeia
- CASTEP
- castor
- CastXML
- CAT-BAT
- CatBoost
- Catch2
- category_encoders
- CatLearn
- CatMAP
- causallift
- causalml
- CaVEMan
- CAVIAR
- Cbc
- CBLAS
- ccache
- CCCL
- CCfits
- CCL
- cclib
- cctbx-base
- cctools
- CD-HIT
- CDAT
- cdbfasta
- CDBtools
- cddlib
- CDFlib
- cDNA_Cupcake
- CDO
- cdo-bindings
- cdsapi
- cell2location
- CellBender
- CellChat
- CellMix
- CellOracle
- Cellpose
- CellRanger
- CellRanger-ARC
- CellRanger-ATAC
- CellRank
- CellTypist
- CENSO
- centerline
- Centrifuge
- Cereal
- CESM-deps
- CFDEMcoupling
- cffi
- cfgrib
- CFITSIO
- cftime
- CGAL
- cget
- Cgl
- CGmapTools
- CGNS
- CharLS
- charm-gems
- CHASE
- Check
- CheckM
- CheckM-Database
- CheckM2
- Cheetah
- Chemaxon-Marvin
- chemprop
- CheMPS2
- CHERAB
- chewBBACA
- chi2comb
- Chimera
- ChimPipe
- ChIPseeker
- Chromaprint
- chromVARmotifs
- cicero
- CIF2Cell
- cimfomfa
- CIRCexplorer
- CIRCexplorer2
- Circlator
- Circos
- Circuitscape
- CIRI
- CIRI-long
- CIRIquant
- cisTEM
- CITE-seq-Count
- Clair3
- Clang
- Clang-AOMP
- Clang-Python-bindings
- CLANS
- CLAPACK
- Clarabel.rs
- CLEAR
- CLEASE
- CLHEP
- CliMetLab
- CLIP
- cliquer
- CLISP
- ClonalFrameML
- CLooG
- CloudCompare
- Clp
- Clustal-Omega
- ClustalW2
- Cluster-Buster
- ClusterShell
- CMake
- CMAverse
- CmdStanR
- cmocean
- cmph
- CMSeq
- CNT-ILP
- CNVkit
- CNVnator
- Co-phylog
- COBRApy
- CoCoALib
- CodAn
- code-cli
- code-server
- CODEX2
- CodingQuarry
- Cogent
- Coin
- CoinUtils
- ColabFold
- colorize
- colossalai
- COMEBin
- Commet
- CompareM
- Compass
- Compress-Raw-Zlib
- COMSOL
- Con3F
- conan
- CONCOCT
- Concorde
- ConcurrentVersionsSystem
- configparser
- configurable-http-proxy
- CONN
- connected-components-3d
- ConnectomeWorkbench
- contextily
- Control-FREEC
- cooler
- CoordgenLibs
- Coot
- CopyKAT
- core-counter
- Coreutils
- corner
- CORSIKA
- COSTA
- CoSymLib
- coverage
- cowsay
- coxeter
- CP2K
- CPB
- CPC2
- cpio
- CPLEX
- CPMD
- CPPE
- CppHeaderParser
- CppUnit
- cppy
- cppyy
- cppzmq
- cpu_features
- cram
- cramtools
- CrayCCE
- CrayGNU
- CrayIntel
- CrayPGI
- crb-blast
- CREST
- CRF++
- CRISPR-DAV
- CRISPResso2
- Critic2
- cromwell
- crossguid
- CrossMap
- CrossTalkZ
- CRPropa
- Crumble
- cryoCARE
- cryoDRGN
- crypt4gh
- cryptography
- CryptoMiniSat
- CrystFEL
- CSB
- CSBDeep
- CSBLAST
- cscope
- csvkit
- ctags
- ctffind
- ctffind5
- CTPL
- Cube
- CubeGUI
- CubeLib
- CubeWriter
- CuCLARK
- CUDA
- CUDA-Samples
- CUDAcompat
- CUDAcore
- CUDD
- cuDNN
- Cufflinks
- CUnit
- CuPy
- cURL
- currentNe
- cuSPARSELt
- custodian
- cutadapt
- cuTENSOR
- cuteSV
- CUTLASS
- CVglasso
- CVX
- CVXOPT
- CVXPY
- CWIPI
- cwltool
- cxxopts
- cysignals
- Cython
- cython-blis
- cytoolz
- Cytoscape
- cytosim
- cyvcf2
- d
- dadi
- dagitty
- Dakota
- DALI
- DaliLite
- Dalton
- damageproto
- dammit
- DANPOS2
- DAS_Tool
- dask
- dask-labextension
- datalad
- datamash
- davix
- DB
- DB_File
- DBCSR
- DBD-mysql
- DBG2OLC
- dblatex
- DBus
- dbus-glib
- dclone
- dcm2niix
- DCMTK
- dd
- deal.II
- deap
- decona
- deconf
- DeconICA
- deepdiff
- deepfold
- DeepLabCut
- DeepLoc
- deepmedic
- DeepMod2
- DeepSurv
- deepTools
- DEICODE
- Delft3D
- Delly
- DeltaLake
- DeMixT
- Demystify
- DendroPy
- denseweight
- DensPart
- Deprecated
- desktop-file-utils
- destiny
- Detectron2
- DETONATE
- devbio-napari
- Devito
- DFA
- DFT-D3
- DFT-D4
- DFTB+
- dftd3-lib
- dftd4
- DGL
- DIA-NN
- DIAL
- dialog
- DIALOGUE
- DIAMOND
- Dice
- DiCE-ML
- dicom2nifti
- DicomBrowser
- dictys
- DiffBind
- Diffutils
- dijitso
- dill
- DIRAC
- distributed
- DistributedStream
- DjVuLibre
- DL_POLY_4
- DL_POLY_Classic
- DL_POLY_Classic_GUI
- dlb
- dlib
- DLPack
- dm-haiku
- dm-reverb
- dm-tree
- DMCfun
- DMLC-Core
- DMTCP
- DOLFIN
- dominate
- dorado
- Doris
- DosageConvertor
- dotNET-Core
- dotNET-Core-Runtime
- dotNET-SDK
- double-conversion
- DoubletFinder
- Doxygen
- DP3
- DRAGMAP
- Drake
- dRep
- drmaa-python
- DROP
- dropEst
- DSA
- dSFMT
- DSRC
- Dsuite
- dtcmp
- dtcwt
- DualSPHysics
- DUBStepR
- dune-core
- dune-fem
- duplex-tools
- dx-toolkit
- dxpy
- DyMat
- dynesty
- e
- E-ANTIC
- e3nn
- ea-utils
- earthengine-api
- easel
- EasyBuild
- EasyMocap
- EasyQC
- ebGSEA
- ecBuild
- ecCodes
- eccodes-python
- ecFlow
- ECL
- eclib
- ED2
- EDirect
- edlib
- EGA-QuickView
- EggLib
- eggnog-mapper
- EGTtools
- eht-imaging
- Eigen
- EigenExa
- EIGENSOFT
- einops
- elastix
- elbencho
- ELFIO
- elfutils
- Elk
- Elmer
- ELPA
- ELPH
- elprep
- ELSI
- ELSI-RCI
- Emacs
- EMAN2
- EMBOSS
- Embree
- emcee
- EMMAX
- empanada-dl
- empanada-napari
- EMU
- enaBrowserTool
- enchant
- enchant-2
- EnergyPlus
- EnsEMBLCoreAPI
- ensmallen
- entrypoints
- epct
- EPD
- EPIC
- epiScanpy
- EpiSCORE
- eQuilibrator
- EricScript
- ESIpy
- ESL-Bundle
- ESM-2
- ESMF
- ESMPy
- ESMValTool
- eSpeak-NG
- ESPResSo
- Essentia
- ETE
- ETSF_IO
- eudev
- EUKulele
- EVcouplings
- Evcxr-REPL
- EveryBeam
- EvidentialGene
- evince
- evmix
- ExaBayes
- ExaML
- Excel-Writer-XLSX
- ExifTool
- exiv2
- Exonerate
- expat
- expect
- expecttest
- eXpress
- ExpressBetaDiversity
- Extrae
- ExtremeLy
- EZC3D
- f
- f90cache
- f90nml
- f90wrap
- Faber
- FabIO
- FACE
- faceswap
- Faiss
- FALCON
- FANN
- fast5
- FASTA
- fasta-reader
- fastahack
- fastai
- FastaIndex
- FastANI
- Fastaq
- fastfilters
- FastFold
- fastjet
- fastjet-contrib
- FastME
- fastml
- fastp
- fastparquet
- fastPHASE
- fastq-pair
- fastq-tools
- FastQ_Screen
- FastQC
- fastqsplitter
- FastQTL
- fastqz
- FastRFS
- fastStructure
- FastTree
- FastViromeExplorer
- FASTX-Toolkit
- fatslim
- fbm
- FBPIC
- FCM
- fdict
- FDMNES
- FDS
- fdstools
- FDTD_Solutions
- feh
- FEniCS
- fermi-lite
- Ferret
- festival
- fetchMG
- FFAVES
- FFC
- FFLAS-FFPACK
- FFmpeg
- ffnet
- ffnvcodec
- fftlib
- FFTW
- FFTW.MPI
- fgbio
- FGSL
- FHI-aims
- FIAT
- FIGARO
- FigureGen
- Fiji
- file
- filevercmp
- Filtlong
- find_circ
- finder
- findhap
- findutils
- fineRADstructure
- fineSTRUCTURE
- fio
- Fiona
- Firefox
- FIRESTARTER
- FireWorks
- fish
- FIt-SNE
- FIX
- fixesproto
- FLAC
- FLAIR
- flair-NLP
- FLANN
- FLASH
- flash-attention
- Flask
- flatbuffers
- flatbuffers-python
- Flax
- FLEUR
- flex
- Flexbar
- FlexiBLAS
- FlexiDot
- Flink
- FLINT
- flit
- flook
- flowFDA
- FLTK
- FLUENT
- Flye
- FMILibrary
- FMM3D
- FMPy
- FMRIprep
- FMS
- fmt
- FoBiS
- FoldX
- fontconfig
- fontsproto
- fonttools
- forbear
- FORD
- foss
- fosscuda
- FoX
- FOX-Toolkit
- fplll
- FPM
- fpocket
- fpylll
- fqtrim
- fqzcomp
- FragGeneScan
- FragPipe
- FRANz
- FreeBarcodes
- freebayes
- FreeFEM
- FreeFem++
- freeglut
- FreeImage
- FreeSASA
- FreeSurfer
- FreeTDS
- freetype
- freetype-py
- FreeXL
- freud-analysis
- FriBidi
- FRUIT
- FRUIT_processor
- FSL
- FSLeyes
- fsm-lite
- fsom
- FSON
- ftfy
- FTGL
- fugue
- fullrmc
- fumi_tools
- funannotate
- FunGAP
- FUNWAVE-TVD
- FUSE
- FuSeq
- FusionCatcher
- futhark
- futile
- future
- fxtract
- g
- G-PhoCS
- g2clib
- g2lib
- g2log
- Gaia
- GAMESS-US
- gap
- GapCloser
- GapFiller
- gappa
- GAPPadder
- GARLI
- garnett
- GAT
- GATB-Core
- GATE
- GATK
- Gaussian
- gawk
- gbasis
- Gblocks
- GBprocesS
- gbs2ploidy
- gc
- GC3Pie
- GCC
- GCCcore
- gcccuda
- gcloud
- GConf
- gcsfs
- GCTA
- Gctf
- GD
- GDAL
- GDB
- gdbgui
- gdbm
- gdc-client
- GDCHART
- GDCM
- GDGraph
- gdist
- Gdk-Pixbuf
- GDMA
- GDRCopy
- Gdspy
- Geant4
- Geant4-data
- gearshifft
- GEGL
- GEM
- GEM-library
- gemelli
- GEMMA
- gemmi
- gencore_variant_detection
- GeneMark-ET
- GenerativeModels
- gengetopt
- GenMap
- Genome_Profiler
- GenomeComb
- GenomeMapper
- genomepy
- GenomeTester4
- GenomeThreader
- GenomeTools
- GenomeWorks
- GenotypeHarmonizer
- genozip
- gensim
- geocube
- GeoDict
- geopandas
- geopy
- georges
- GEOS
- geosphere
- Gerris
- GETORB
- GetOrganelle
- gettext
- gexiv2
- gfbf
- GFF3-toolkit
- GffCompare
- gffread
- gffutils
- gflags
- GFOLD
- gh
- GHC
- Ghostscript
- GI-DocGen
- giac
- Gibbs2
- giflib
- gifsicle
- GIMIC
- gimkl
- GimmeMotifs
- GIMP
- gimpi
- gimpic
- GIMPS
- giolf
- giolfc
- Giotto-Suite
- git
- git-annex
- git-extras
- git-lfs
- GitPython
- Givaro
- Giza
- GKeyll
- GKlib-METIS
- gkmSVM
- GL2PS
- Glade
- glew
- GLFW
- GLI
- GLib
- glib-networking
- glibc
- GLibmm
- GLIMMER
- GlimmerHMM
- GLIMPSE
- GLM
- GLM-AED
- GlobalArrays
- Globus-CLI
- GlobusConnectPersonal
- glog
- GLPK
- glproto
- Glucose
- GMAP-GSNAP
- GMP
- GMP-ECM
- gmpflf
- gmpich
- gmpolf
- gmpy2
- gmsh
- GMT
- gmvapich2
- gmvolf
- GNU
- gnupg-bundle
- gnuplot
- GnuTLS
- Go
- goalign
- GOATOOLS
- gobff
- GObject-Introspection
- goblf
- GOBNILP
- Godon
- gofasta
- golf
- gomkl
- gompi
- gompic
- google-java-format
- googletest
- gotree
- GP2C
- GPAW
- GPAW-setups
- gperf
- gperftools
- GPflow
- gpustat
- GPy
- GPyOpt
- GPyTorch
- Grace
- Gradle
- gradunwarp
- graph-tool
- GraphDB
- Graphene
- GraphicsMagick
- graphite2
- GraPhlAn
- GraphMap
- GraphMap2
- Graphviz
- graphviz-python
- GRASP
- GRASP-suite
- GRASS
- Greenlet
- Grep
- gretl
- grib_api
- grid
- GRIDSS
- GRIT
- GRNBoost
- groff
- GroIMP
- GROMACS
- GromacsWrapper
- Groovy
- gRPC
- grpcio
- GSD
- GSEA
- gsettings-desktop-schemas
- GSL
- gSOAP
- gspell
- gsport
- GST-plugins-bad
- GST-plugins-base
- GStreamer
- gsutil
- gsw
- GTDB-Tk
- GTK+
- gtk-doc
- GTK2
- GTK3
- GTK4
- GtkSourceView
- GTOOL
- GTS
- Gubbins
- guenomu
- GUIDANCE
- Guile
- GULP
- Gurobi
- GUSHR
- Gymnasium
- gzip
- h
- h4toh5
- H5hut
- h5netcdf
- h5py
- Hadoop
- HAL
- hampel
- hanythingondemand
- HAPGEN2
- HarfBuzz
- Harminv
- harmony
- hatch-jupyter-builder
- hatchling
- HBase
- HD-BET
- HDBSCAN
- HDDM
- HDF
- HDF-EOS
- HDF-EOS2
- HDF-EOS5
- HDF5
- hdf5storage
- HDFView
- hdWGCNA
- HEALPix
- Health-GPS
- heaptrack
- hector
- HeFFTe
- Hello
- help2man
- HepMC
- HepMC3
- HERRO
- hevea
- HF-Datasets
- HH-suite
- HiC-Pro
- hic-straw
- HiCExplorer
- HiCMatrix
- hierfstat
- hifiasm
- HighFive
- HiGHS
- Highway
- HIP
- hipify-clang
- HIPS
- hipSYCL
- hiredis
- HISAT2
- histolab
- hivtrace
- hl7apy
- HLAminer
- hmmcopy_utils
- HMMER
- HMMER2
- hmmlearn
- HOME
- HOMER
- HOOMD-blue
- Horovod
- horton
- how_are_we_stranded_here
- HPCC
- HPCG
- HPCX
- HPDBSCAN
- HPL
- htop
- HTSeq
- HTSlib
- HTSplotter
- hub
- humann
- hunspell
- hwloc
- Hybpiper
- Hydra
- Hyperopt
- HyperQueue
- hyperspy
- HyPhy
- HyPo
- hypothesis
- Hypre
- i
- i-cisTarget
- i-PI
- I-TASSER
- i7z
- ICA-AROMA
- icc
- iccifort
- iccifortcuda
- iced
- ichorCNA
- icmake
- ICON
- iCount
- ICU
- IDBA-UD
- idemux
- IDG
- ieeg-cli
- IEntropy
- ifort
- IgBLAST
- IGMPlot
- igraph
- IGV
- igv-reports
- igvShiny
- IGVTools
- iibff
- iimkl
- iimpi
- iimpic
- IJulia
- ILAMB
- ilastik-napari
- IMa2
- IMa2p
- IMAGE
- imagecodecs
- imageio
- ImageJ
- ImageMagick
- imake
- Imath
- IMB
- imbalanced-learn
- imgaug
- imkl
- imkl-FFTW
- IML
- Imlib2
- immunedeconv
- IMOD
- impi
- IMPUTE2
- imutils
- InChI
- indicators
- Inelastica
- inferCNV
- infercnvpy
- Inferelator
- Infernal
- inflection
- Infomap
- inih
- inline
- InParanoid
- inputproto
- Inspector
- IntaRNA
- INTEGRATE
- INTEGRATE-Neo
- intel
- intel-compilers
- IntelClusterChecker
- intelcuda
- IntelDAAL
- IntelPython
- InterOp
- InterProScan
- InterProScan_data
- intervaltree
- intervaltree-python
- intltool
- io_lib
- ioapi
- iodata
- iomkl
- iompi
- IonQuant
- IOR
- IOzone
- iperf
- IPM
- Ipopt
- ipp
- IPy
- ipympl
- ipyparallel
- ipyrad
- IPython
- IQ-TREE
- Iris
- IRkernel
- irodsfs
- IronPython
- ISA-L
- ISL
- isoCirc
- IsoformSwitchAnalyzeR
- IsoNet
- IsoQuant
- IsoSeq
- ispc
- itac
- ITK
- itpp
- ITSTool
- ITSx
- iVar
- j
- JAGS
- Jansson
- Jasmine
- JasPer
- Java
- JavaFX
- jax
- JAXFrontCE
- jbigkit
- Jblob
- jedi
- jedi-language-server
- Jellyfish
- jemalloc
- jhbuild
- JiTCODE
- jiter
- jModelTest
- Jmol
- Jorg
- joypy
- jq
- json-c
- json-fortran
- JSON-GLib
- JsonCpp
- JUBE
- Judy
- Julia
- JUnit
- junos-eznc
- Jupyter-bundle
- jupyter-collaboration
- jupyter-contrib-nbextensions
- jupyter-matlab-proxy
- jupyter-resource-usage
- jupyter-rsession-proxy
- jupyter-server
- jupyter-server-proxy
- jupyter-vscode-proxy
- JupyterHub
- JupyterLab
- jupyterlab-lmod
- jupyterlmod
- JupyterNotebook
- JWM
- jxrlib
- k
- l
- L_RNA_scaffolder
- Lab-Streaming-Layer
- Lace
- LADR
- lagrangian-filtering
- LAME
- LAMMPS
- lancet
- LangChain
- langchain-anthropic
- langchain-mistralai
- langchain-openai
- LAPACK
- LASSO-Python
- LAST
- LASTZ
- lavaan
- LayoutParser
- LBFGS++
- lcalc
- LCov
- LDC
- lDDT
- LeadIT
- leafcutter
- leidenalg
- LEMON
- Leptonica
- LERC
- less
- LevelDB
- Levenshtein
- lftp
- LHAPDF
- LIANA
- libabigail
- libaec
- libaed2
- libaio
- libarchive
- libav
- libavif
- libbaseencode
- libBigWig
- libbitmask
- libbraiding
- libcdms
- libcerf
- libcint
- libcircle
- libcmaes
- libconfig
- libcotp
- libcpuset
- libcroco
- libctl
- libdap
- libde265
- libdeflate
- libdivsufsort
- libdrm
- libdrs
- libdwarf
- libedit
- libelf
- libemf
- libepoxy
- libev
- libevent
- libexif
- libfabric
- libfdf
- libffcall
- libffi
- libFLAME
- libfontenc
- libfyaml
- libgcrypt
- libgd
- libgdiplus
- libGDSII
- libgeotiff
- libgit2
- libglade
- libGLU
- libglvnd
- libgpg-error
- libgpuarray
- libGridXC
- libgtextutils
- libgxps
- libhandy
- libharu
- libheif
- libhomfly
- libibmad
- libibumad
- libICE
- libiconv
- libidn
- libidn2
- Libint
- LiBis
- libjpeg-turbo
- libjxl
- libleidenalg
- LibLZF
- libmad
- libmatheval
- libmaus2
- libmbd
- libMemcached
- libmicrohttpd
- libmo_unpack
- libmypaint
- libnsl
- libobjcryst
- libogg
- libopus
- libosmium
- libpci
- libpciaccess
- libplinkio
- libpng
- libpsl
- libPSML
- libpsortb
- libpspio
- libpthread-stubs
- libQGLViewer
- libreadline
- libRmath
- librosa
- librsb
- librsvg
- librttopo
- libsamplerate
- libSBML
- libsigc++
- libsigsegv
- libSM
- libsndfile
- libsodium
- LibSoup
- libspatialindex
- libspatialite
- libspectre
- libssh
- libStatGen
- libsupermesh
- LIBSVM
- LIBSVM-MATLAB
- LIBSVM-Python
- libtar
- libtasn1
- libtecla
- LibTIFF
- libtirpc
- libtool
- libtree
- libunistring
- libunwind
- libutempter
- LibUUID
- libuv
- libvdwxc
- libvorbis
- libvori
- libWallModelledLES
- libwebp
- libwpe
- libX11
- libXau
- libxc
- libxcb
- libXcursor
- libXdamage
- libXdmcp
- libXext
- libXfixes
- libXfont
- libXft
- libXi
- libXinerama
- libxkbcommon
- libxml++
- libxml2
- libxml2-python
- libXmu
- libXp
- libXpm
- libXrandr
- libXrender
- libxslt
- libxsmm
- libXt
- libXxf86vm
- libyaml
- libzeep
- libzip
- lie_learn
- lifelines
- Lighter
- Lightning
- liknorm
- likwid
- lil-aretomo
- limix
- LinBox
- line_profiler
- Lingeling
- LISFLOOD-FP
- lit
- LittleCMS
- LLDB
- LLVM
- LMDB
- LMfit
- Lmod
- lmoments3
- LncLOOM
- LocARNA
- LoFreq
- Log-Log4perl
- logaddexp
- LOHHLA
- Loki
- longestrunsubsequence
- longread_umi
- Longshot
- loompy
- loomR
- LoopTools
- LoRDEC
- LPeg
- LPJmL
- lpsolve
- LRBinner
- lrcalc
- lrslib
- LS-PrePost
- LSD2
- LSMS
- LTR_retriever
- LtrDetector
- Lua
- LuaJIT
- LuaJIT2-OpenResty
- LuaRocks
- Lucene-Geo-Gazetteer
- LUMPY
- LUSCUS
- lwgrp
- lxml
- lynx
- lz4
- LZO
- m
- M1QN3
- M3GNet
- M4
- m4ri
- m4rie
- MACH
- MACS2
- MACS3
- MACSE
- maeparser
- MAFFT
- MAGeCK
- MAGIC
- magick
- Magics
- magma
- MAGMA-gene-analysis
- MagresPython
- mahotas
- MAJIQ
- make
- makedepend
- makedepf90
- makefun
- makeinfo
- MAKER
- Mako
- mallard-ducktype
- Mamba
- mandrake
- mannkendall
- manta
- mapDamage
- Maple
- MapSplice
- Maq
- MariaDB
- MariaDB-connector-c
- Markdown
- MARS
- Mash
- Mashtree
- MaSuRCA
- MATES
- Mathematica
- MathGL
- MATIO
- MATLAB
- MATLAB-Engine
- matlab-proxy
- matplotlib
- matplotlib-inline
- MATSim
- maturin
- Maude
- mauveAligner
- Maven
- mawk
- MaxBin
- MaxQuant
- mayavi
- maze
- MbedTLS
- MBROLA
- mbuffer
- MBX
- mc
- MCL
- mcqd
- MCR
- mctc-lib
- mcu
- MDAnalysis
- MDBM
- MDI
- MDSplus
- MDSplus-Java
- MDSplus-Python
- mdtest
- MDTraj
- mdust
- meboot
- medaka
- medImgProc
- MedPy
- Meep
- MEGA
- MEGACC
- MEGAHIT
- Megalodon
- MEGAN
- Meld
- MEM
- MEME
- memkind
- memory-profiler
- MEMOTE
- memtester
- meRanTK
- MERCKX
- Mercurial
- Mesa
- Mesa-demos
- meshalyzer
- meshio
- MeshLab
- meshtool
- Meson
- meson-python
- Mesquite
- MESS
- MetaBAT
- MetaboAnalystR
- MetaDecoder
- metaerg
- MetaEuk
- MetaGeneAnnotator
- Metagenome-Atlas
- Metal
- MetalWalls
- MetaMorpheus
- MetaPhlAn
- MetaPhlAn2
- metaWRAP
- Metaxa2
- meteogrid
- methylartist
- MethylDackel
- methylpy
- METIS
- mfqe
- mgen
- mgltools
- mhcflurry
- mhcnuggets
- MICOM
- micro-sam
- MicrobeAnnotator
- microctools
- MiGEC
- MIGRATE-N
- Mikado
- Miller
- mimalloc
- MINC
- MinCED
- Mini-XML
- miniasm
- minibar
- MiniCARD
- Miniconda2
- Miniconda3
- minieigen
- Miniforge3
- Minimac4
- minimap2
- Minipolish
- miniprot
- MiniSat
- minizip
- MINPACK
- MinPath
- MIRA
- miRDeep2
- Mish-Cuda
- misha
- MITgcmutils
- MITObim
- MitoHiFi
- MitoZ
- MiXCR
- MixMHC2pred
- mkl-dnn
- mkl-service
- mkl_fft
- ml-collections
- ml_dtypes
- MLC
- MLflow
- mlpack
- MLxtend
- mm-common
- Mmg
- MMSEQ
- MMseqs2
- mmtf-cpp
- MNE-Python
- MOABB
- MOABS
- MOB-suite
- ModelTest-NG
- MODFLOW
- modred
- MOFA2
- Molcas
- mold
- Molden
- molecularGSM
- Molekel
- molmod
- Molpro
- MONA
- MONAI
- MONAI-Label
- mongolite
- Mono
- Monocle3
- moonjit
- MOOSE
- mordecai
- MoreRONN
- morphosamplers
- mosdepth
- Mothur
- motif
- MotionCor2
- MotionCor3
- motionSegmentation
- MoviePy
- mpath
- MPB
- MPC
- MPFI
- MPFR
- mpi4py
- MPICH
- MPICH2
- mpifileutils
- mpiP
- MPJ-Express
- mpmath
- MrBayes
- mrcfile
- MRChem
- MRCPP
- MRIcron
- MRPRESSO
- MRtrix
- MSFragger
- msgpack-c
- MSM
- MSPC
- msprime
- mstore
- MTL4
- MuJoCo
- mujoco-py
- multicharge
- multichoose
- MultilevelEstimators
- MultiNest
- multiprocess
- MultiQC
- Multiwfn
- muMerge
- MUMmer
- mumott
- MUMPS
- muParser
- muparserx
- MuPeXI
- MUSCLE
- MUSCLE3
- MuSiC
- MUST
- MuTect
- mutil
- MVAPICH2
- MView
- mxml
- mxmlplus
- MXNet
- MyCC
- mygene
- MyMediaLite
- mympingpong
- Myokit
- mypy
- MySQL
- MySQL-python
- mysqlclient
- n
- n2v
- NAG
- NAGfor
- NAMD
- namedlist
- nano
- NanoCaller
- NanoComp
- nanocompore
- NanoFilt
- nanoflann
- nanoget
- NanoLyse
- nanomath
- nanomax-analysis-utils
- nanonet
- NanoPlot
- nanopolish
- NanopolishComp
- NanoStat
- napari
- napari-denoiseg
- NASM
- nauty
- nbclassic
- NBO
- NCBI-Toolkit
- ncbi-vdb
- NCCL
- NCCL-tests
- ncdf4
- ncdu
- NCIPLOT
- NCL
- NCO
- ncolor
- ncompress
- ncurses
- ncview
- nd2reader
- ne
- NECAT
- NECI
- NEdit
- Nek5000
- Nektar++
- nellie
- neon
- neptune-client
- Net-core
- netCDF
- netCDF-C++
- netCDF-C++4
- netCDF-Fortran
- netcdf4-python
- netloc
- NetLogo
- netMHC
- netMHCII
- netMHCIIpan
- netMHCpan
- NetPIPE
- NetPyNE
- nettle
- networkTools
- networkx
- NeuroKit
- NEURON
- NewHybrids
- Nextflow
- NextGenMap
- NextPolish
- NEXUS-CL
- nf-core
- nf-core-mag
- NFFT
- nghttp2
- nghttp3
- NGLess
- nglview
- NGS
- NGS-Python
- NGSadmix
- NGSpeciesID
- ngspice
- ngtcp2
- NiBabel
- nichenetr
- NIfTI
- nifti2dicom
- nifty
- Nilearn
- Nim
- NIMBLE
- Ninja
- Nipype
- NLMpy
- nlohmann_json
- NLopt
- NLTK
- nnU-Net
- Node-RED
- nodejs
- noise
- Normaliz
- nose-parameterized
- nose3
- novaSTA
- novoalign
- NOVOPlasty
- npstat
- NRGLjubljana
- Nsight-Compute
- Nsight-Systems
- NSPR
- NSS
- nsync
- ntCard
- ntEdit
- ntHits
- NTL
- NTPoly
- num2words
- numactl
- numba
- numdiff
- numexpr
- numpy
- NVHPC
- nvitop
- nvofbf
- nvompi
- NVSHMEM
- nvtop
- NWChem
- NxTrim
- o
- Oases
- OBITools
- OBITools3
- OCaml
- ocamlbuild
- occt
- oceanspy
- OCNet
- Octave
- Octopus-vcf
- OGDF
- olaFlow
- olego
- OMA
- ome-types
- OmegaFold
- OMERO.insight
- OMERO.py
- Omnipose
- onedrive
- ONNX
- ONNX-Runtime
- ont-fast5-api
- ont-guppy
- ont-remora
- OOMPA
- OPARI2
- Open-Data-Cube-Core
- OpenAI-Gym
- openai-python
- OpenBabel
- OpenBLAS
- openCARP
- OpenCensus-python
- OpenCoarrays
- OpenColorIO
- OpenCV
- OpenEXR
- OpenFace
- OpenFAST
- OpenFOAM
- OpenFOAM-Extend
- OpenFold
- OpenForceField
- OpenForceField-Toolkit
- OpenImageIO
- OpenJPEG
- OpenKIM-API
- openkim-models
- OpenMEEG
- OpenMM
- OpenMM-PLUMED
- OpenMMTools
- OpenMolcas
- OpenMPI
- OpenMS
- OpenNLP
- OpenPGM
- OpenPIV
- openpyxl
- OpenRefine
- OpenSceneGraph
- OpenSees
- OpenSlide
- OpenSlide-Java
- openslide-python
- OpenSSL
- OpenStackClient
- OPERA
- OPERA-MS
- OptaDOS
- Optax
- optiSLang
- OptiType
- OptiX
- Optuna
- OR-Tools
- ORCA
- ORFfinder
- OrfM
- orjson
- orthAgogue
- OrthoFinder
- OrthoMCL
- Osi
- OSPRay
- OSU-Micro-Benchmarks
- OTF2
- OVITO
- ownCloud
- oxDNA
- oxford_asl
- p
- p11-kit
- p4-phylogenetics
- p4est
- p4vasp
- p7zip
- packmol
- PAGAN2
- pagmo
- pairsnp
- PAL2NAL
- paladin
- PALEOMIX
- PAML
- panaroo
- pandapower
- pandas
- pandas-datareader
- PANDAseq
- Pandoc
- Panedr
- Pango
- pangolin
- panito
- PAPI
- parallel
- parallel-fastq-dump
- Parallel-Hashmap
- ParallelIO
- parameterized
- paramiko
- parasail
- Paraver
- ParaView
- Parcels
- PARI-GP
- ParmEd
- ParMETIS
- ParMGridGen
- Parsl
- PartitionFinder
- PASA
- pasta
- PaStiX
- pastml
- patch
- patchelf
- path.py
- PAUP
- pauvre
- pbbam
- pbcopper
- pbdagcon
- pbipa
- pblat
- pbmm2
- pbs_python
- PBSuite
- PBZIP2
- PCAngsd
- PCC
- PCL
- PCMSolver
- PCRaster
- PCRE
- PCRE2
- pdf2docx
- PDM
- pdsh
- PDT
- peakdetect
- PEAR
- PEcAn
- PennCNV
- PEPT
- Percolator
- Perl
- perl-app-cpanminus
- Perl-bundle-CPAN
- Perl4-CoreLibs
- Perseus
- PEST++
- PETSc
- petsc4py
- PfamScan
- PFFT
- pfind
- pftoolsV3
- pFUnit
- PGDSpider
- PGI
- PGPLOT
- PHANOTATE
- Phantompeakqualtools
- PHASE
- PHAST
- Phenoflow
- PheWAS
- PheWeb
- Philosopher
- PhiPack
- PHLAT
- phonemizer
- phono3py
- phonopy
- photontorch
- phototonic
- PHYLIP
- PhyloBayes-MPI
- phylokit
- phylonaut
- PhyloPhlAn
- phyluce
- PhyML
- phyx
- picard
- PICI-LIGGGHTS
- PICRUSt2
- pigz
- PIL
- PileOMeth
- Pillow
- Pillow-SIMD
- Pilon
- PIMS
- Pindel
- Pingouin
- Pint
- pip
- PIPITS
- PIRATE
- pIRS
- Pisces
- piSvM
- piSvM-JSC
- pixman
- pizzly
- pkg-config
- pkgconf
- pkgconfig
- PLAMS
- planarity
- plantcv
- plantri
- PlaScope
- PlasmaPy
- PLAST
- Platanus
- Platypus
- Platypus-Opt
- plc
- PLINK
- plinkliftover
- plinkQC
- PLINKSEQ
- plmc
- plot1cell
- Ploticus
- plotly
- plotly-orca
- plotly.py
- plotutils
- PLplot
- PLUMED
- PLY
- PMIx
- pmt
- pmx
- PnetCDF
- pocl
- pod5-file-format
- poetry
- polars
- polymake
- pomkl
- pompi
- poppler
- poppunk
- popscle
- popt
- Porechop
- porefoam
- poretools
- PortAudio
- Portcullis
- PortMidi
- Postgres-XL
- PostgreSQL
- POT
- POV-Ray
- powerlaw
- pp-sketchlib
- PPanGGOLiN
- PPfold
- ppl
- pplacer
- pplpy
- PRANK
- PRC
- preCICE
- premailer
- PREQUAL
- preseq
- presto
- PretextMap
- pretty-yaml
- primecount
- primecountpy
- Primer3
- PRINSEQ
- printproto
- PRISMS-PF
- ProbABEL
- ProBiS
- prodigal
- ProFit
- PROJ
- ProjectQ
- prokka
- prompt-toolkit
- proovread
- propy
- ProteinMPNN
- Proteinortho
- ProtHint
- protobuf
- protobuf-python
- protozero
- PRRTE
- PRSice
- PSASS
- pscom
- PSI
- PSI4
- PsiCLASS
- PSIPRED
- PSM2
- psmc
- psmpi
- psmpi2
- PSolver
- PSORTb
- psrecord
- pstoedit
- psutil
- psycopg
- psycopg2
- ptemcee
- PTESFinder
- pubtcrs
- pugixml
- pullseq
- PuLP
- purge_dups
- pv
- py
- py-aiger
- py-aiger-bdd
- py-c3d
- py-cpuinfo
- py3Dmol
- pyABC
- PyAEDT
- PyAMG
- PyAPS3
- PyAV
- pybedtools
- PyBEL
- PyBerny
- pyBigWig
- pybind11
- pybind11-stubgen
- pybinding
- PyBioLib
- PyCairo
- PyCalib
- pyccel
- PyCharm
- PyCheMPS2
- Pychopper
- PyCifRW
- PyClone
- pycma
- pycocotools
- pycodestyle
- PyCogent
- pycoQC
- pycubescd
- PyCUDA
- PycURL
- PyDamage
- pydantic
- PyDatastream
- pydicom
- pydicom-seg
- pydlpoly
- pydot
- pyEGA3
- pyenchant
- PyEVTK
- PyEXR
- pyFAI
- pyfaidx
- pyfasta
- PyFFmpeg
- pyFFTW
- pyfits
- PyFMI
- PyFoam
- PyFR
- PyFrag
- pyGAM
- pygame
- pygccxml
- pyGenomeTracks
- PyGEOS
- pyGIMLi
- Pygments
- pygmo
- PyGObject
- pygraphviz
- pygrib
- PyGTK
- PyGTS
- PyGWAS
- pyhdf
- PyHMMER
- PyImageJ
- PyInstaller
- pyiron
- Pyke3
- pylift
- Pylint
- pylipid
- pyMannKendall
- pymatgen
- pymatgen-db
- pymbar
- pyMBE
- PyMC
- PyMC3
- pymca
- pymemcache
- PyMOL
- PyNAST
- pyobjcryst
- PyOD
- pyodbc
- Pyomo
- PyOpenCL
- PyOpenGL
- pyparsing
- pyperf
- pyplusplus
- pypmt
- PYPOWER
- pyproj
- PyPSA
- PyPy
- pyqstem
- PyQt
- PyQt-builder
- PyQt5
- PyQtGraph
- pyradiomics
- PyRe
- PyRETIS
- pyringe
- pyro-api
- pyro-ppl
- Pyro4
- PyRosetta
- Pysam
- pysamstats
- PySAT
- pyScaf
- pySCENIC
- PySCF
- pyseer
- pysheds
- pyshp
- PySide2
- PySINDy
- pyslim
- pysndfx
- Pysolar
- pyspoa
- pysqlite
- PyStan
- pystencils
- pysteps
- pystran
- PyTables
- PyTensor
- pytesseract
- pytest
- pytest-benchmark
- pytest-cpp
- pytest-flakefinder
- pytest-rerunfailures
- pytest-shard
- pytest-workflow
- pytest-xdist
- pythermalcomfort
- PYTHIA
- Python
- python-blosc
- Python-bundle
- Python-bundle-PyPI
- python-casacore
- python-docx
- python-elf
- python-hl7
- python-igraph
- python-irodsclient
- python-isal
- python-Levenshtein
- python-libsbml
- python-louvain
- python-mujoco
- python-parasail
- python-telegram-bot
- python-weka-wrapper3
- python-xxhash
- pythran
- PyTorch
- pytorch-3dunet
- PyTorch-bundle
- pytorch-CycleGAN-pix2pix
- PyTorch-Geometric
- PyTorch-Ignite
- PyTorch-Image-Models
- PyTorch-Lightning
- PyTorch3D
- PyTorchVideo
- PyVCF
- PyVCF3
- PyVista
- pyWannier90
- PyWavelets
- PyWBGT
- pyXDF
- PyYAML
- PyZMQ
- q
- q2-krona
- Q6
- QCA
- qcat
- QCG-PilotJob
- qcint
- QCxMS
- QD
- QDD
- QEMU
- qforce
- QGIS
- Qhull
- QIIME
- QIIME2
- Qiskit
- QJson
- qmflows
- QML
- qnorm
- qpth
- qrupdate
- QScintilla
- Qt
- Qt5
- Qt5Webkit
- Qt6
- Qtconsole
- QtKeychain
- QTLtools
- qtop
- QtPy
- Qualimap
- Quandl
- QuantumESPRESSO
- QUAST
- QuaZIP
- QuickFF
- QuickPIC
- QuickTree
- Quip
- Quorum
- QuPath
- QuTiP
- Qwt
- QwtPolar
- r
- R
- R-bundle-Bioconductor
- R-bundle-CRAN
- R-INLA
- R-keras
- R-MXM
- R-opencv
- R-tesseract
- R-transport
- R2jags
- Racon
- radeontop
- radian
- RaGOO
- Ragout
- RagTag
- rampart
- randfold
- randrproto
- rankwidth
- rapidcsv
- RapidJSON
- rapidNJ
- rapidtide
- RAPSearch2
- Raptor
- Rascaf
- RASPA2
- Rasqal
- rasterio
- rasterstats
- Ratatosk
- Raven
- RAxML
- RAxML-NG
- Ray-assembler
- Ray-project
- Raysect
- RBFOpt
- RCall
- rclone
- Rcorrector
- RcppGSL
- rCUDA
- RDFlib
- RDKit
- RDP-Classifier
- RE2
- re2c
- Reads2snp
- Reapr
- ReaxFF
- RECON
- Red
- Redis
- redis-py
- Redland
- Redundans
- ReFrame
- Regenie
- regionmask
- RegTools
- Relate
- RELION
- remake
- ReMatCh
- REMORA
- renderproto
- RepastHPC
- RepeatMasker
- RepeatModeler
- RepeatScout
- request
- requests
- RERconverge
- ResistanceGA
- resolos
- Restrander
- rethinking
- retworkx
- RevBayes
- RFdiffusion
- rgdal
- rgeos
- Rgurobi
- rhdf5
- RHEIA
- RheoTool
- Rhodium
- rickflow
- RInChI
- rioxarray
- ripunzip
- rising
- Rivet
- rjags
- RLCard
- rmarkdown
- Rmath
- rMATS-long
- rMATS-turbo
- RMBlast
- RNA-Bloom
- RNA-SeQC
- RNAclust
- RNAcode
- RNAIndel
- RNAmmer
- rnaQUAST
- RNAz
- RnBeads
- Roary
- ROCm
- rocm-cmake
- ROCm-CompilerSupport
- rocm-smi
- rocminfo
- ROCR-Runtime
- ROCT-Thunk-Interface
- ROI_PAC
- ROME
- ROOT
- root_numpy
- rootpy
- Rosetta
- rpmrebuild
- RPostgreSQL
- rpy2
- RQGIS3
- RSEM
- RSeQC
- RStan
- rstanarm
- RStudio-Server
- RTG-Tools
- Rtree
- ruamel.yaml
- Ruby
- Ruby-Tk
- ruffus
- ruptures
- Rust
- rustworkx
- s
- S-Lang
- s3fs
- S4
- Sabre
- safestringlib
- Safetensors
- SAGE
- Sagemath
- Sailfish
- SALib
- Salmon
- SALMON-TDDFT
- Sambamba
- samblaster
- Samcef
- samclip
- samplot
- SAMtools
- sansa
- SAP
- SAS
- Satsuma2
- savvy
- Saxon-HE
- SBCL
- sbt
- ScaFaCoS
- ScaLAPACK
- Scalasca
- SCALCE
- Scalene
- scanpy
- scArches
- scCODA
- scCustomize
- sceasy
- SCENIC
- SCENICplus
- scFEA
- scGeneFit
- SCGid
- scGSVA
- scHiCExplorer
- Schrodinger
- scib
- scib-metrics
- sciClone
- ScientificPython
- scikit-allel
- scikit-bio
- scikit-build
- scikit-build-core
- scikit-cuda
- scikit-extremes
- scikit-image
- scikit-learn
- scikit-lego
- scikit-misc
- scikit-multilearn
- scikit-optimize
- scikit-plot
- scikit-uplift
- SCIP
- SCIPhI
- scipy
- SciPy-bundle
- SciTools-Iris
- SCnorm
- Scoary
- SCons
- SCOOP
- SCopeLoomR
- Score-P
- SCOTCH
- scp
- scPred
- Scrappie
- SCReadCounts
- scrublet
- scVelo
- scvi-tools
- Scythe
- SDCC
- SDL
- SDL2
- SDL2_gfx
- SDL2_image
- SDL2_mixer
- SDL2_ttf
- SDL_image
- SDSL
- sdsl-lite
- Seaborn
- SEACells
- SearchGUI
- SeaView
- SECAPR
- Seeder
- segemehl
- segment-anything
- segmentation-models
- segmentation-models-pytorch
- SeisSol
- SelEstim
- SELFIES
- SemiBin
- semla
- Sentence-Transformers
- SentencePiece
- sentinelsat
- sep
- SEPP
- Seq-Gen
- seq2HLA
- SeqAn
- SeqAn3
- SeqKit
- SeqLib
- Seqmagick
- SeqPrep
- seqtk
- Serf
- setuptools
- setuptools-rust
- Seurat
- SeuratData
- SeuratDisk
- SeuratWrappers
- sf
- sfftk
- Shannon
- SHAP
- shapAAR
- SHAPEIT
- SHAPEIT4
- Shapely
- SharedMeatAxe
- sharutils
- Shasta
- ShengBTE
- shift
- SHORE
- Short-Pair
- shovill
- shrinkwrap
- SHTns
- Sibelia
- SICER2
- sickle
- Siesta
- SignalP
- silhouetteRank
- silx
- simanneal
- simint
- SimNIBS
- SimPEG
- SIMPLE
- Simple-DFTD3
- SimpleElastix
- SimpleITK
- simpy
- Simstrat
- SimVascular
- Single-cell-python-bundle
- SingleM
- Singular
- sinto
- SiNVICT
- SIONlib
- SIP
- SIRIUS
- sirocco
- siscone
- SISSO
- SISSO++
- SKA2
- SKESA
- sketchmap
- skewer
- sklearn-pandas
- sklearn-som
- skorch
- sktime
- SlamDunk
- SLATEC
- SLEPc
- slepc4py
- sleuth
- slidingwindow
- SLiM
- slow5tools
- slurm-drmaa
- smafa
- smallgenomeutilities
- SMAP
- SMARTdenovo
- SMC++
- smfishHmrf
- smithwaterman
- Smoldyn
- smooth-topk
- SMRT-Link
- SMV
- snakemake
- SNAP
- SNAP-ESA
- SNAP-ESA-python
- SNAP-HMM
- SNAPE-pooled
- snaphu
- snappy
- Sniffles
- snippy
- snp-sites
- snpEff
- SNPhylo
- SNPomatic
- SOAPaligner
- SOAPdenovo-Trans
- SOAPdenovo2
- SOAPfuse
- socat
- SOCI
- SolexaQA++
- solo
- sonic
- SoPlex
- SoQt
- SortMeRNA
- SoupX
- SoX
- SoXt
- SpaceRanger
- Spack
- spaCy
- SPAdes
- spaln
- Spark
- sparse-neighbors-search
- sparsehash
- SpatialDE
- spatialreg
- spdlog
- SpectrA
- spectral.methods
- speech_tools
- SPEI
- spektral
- SpFFT
- spglib
- spglib-python
- Sphinx
- Sphinx-RTD-Theme
- SpiceyPy
- SpiecEasi
- spla
- SplAdder
- SPLASH
- SpliceMap
- split-seq
- splitRef
- SPM
- spoa
- SPOOLES
- SPOTPY
- SPRNG
- Spyder
- SQLAlchemy
- SQLite
- SqueezeMeta
- Squidpy
- SRA-Toolkit
- sradownloader
- SRPRISM
- SRST2
- SSAHA2
- SSN
- SSPACE_Basic
- SSW
- Stable-Baselines3
- STACEY
- Stack
- Stacks
- STAMP
- StaMPS
- Stampy
- STAR
- STAR-CCM+
- STAR-Fusion
- stardist
- starparser
- stars
- Stata
- Statistics-R
- statsmodels
- STEAK
- STIR
- stpipeline
- strace
- Strainberry
- STREAM
- strelka
- StringTie
- stripy
- STRique
- Structure
- Structure_threader
- STRUMPACK
- suave
- SuAVE-biomat
- submitit
- Subread
- subset-bam
- subunit
- Subversion
- suds
- SuiteSparse
- SUMACLUST
- SUMATRA
- SUMO
- SUNDIALS
- SunPy
- SuperLU
- SuperLU_DIST
- supermagic
- supernova
- SUPPA
- SURVIVOR
- SVclone
- SVDetect
- SVDquest
- SVDSS2
- SVG
- SVIM
- svist4get
- swarm
- SWASH
- SWAT+
- swifter
- SWIG
- SWIPE
- swissknife
- SymEngine
- SymEngine-python
- SYMMETRICA
- SYMPHONY
- sympy
- synapseclient
- synthcity
- SyRI
- sysbench
- Szip
- t
- T-Coffee
- t-SNE-CUDA
- tabix
- tabixpp
- taco
- TagDust
- TagLib
- Taiyaki
- TALON
- TALYS
- TAMkin
- tantan
- Tapenade
- task-spooler
- taxator-tk
- TBA
- tbb
- tbl2asn
- TCC
- Tcl
- TCLAP
- tcsh
- tdlib
- tecplot360ex
- TELEMAC-MASCARET
- Telescope
- Teneto
- tensorboard
- tensorboardX
- TensorFlow
- tensorflow-compression
- TensorFlow-Datasets
- TensorFlow-Graphics
- tensorflow-probability
- TensorRT
- terastructure
- termcolor
- Tesla-Deployment-Kit
- tesseract
- testpath
- TetGen
- TEToolkit
- TEtranscripts
- texinfo
- texlive
- Text-CSV
- TF-COMB
- TFEA
- Theano
- ThemisPy
- THetA
- thirdorder
- thurstonianIRT
- TiCCutils
- tidybayes
- tidymodels
- Tika
- tiktoken
- TiMBL
- time
- timm
- TINKER
- tiny-cuda-nn
- TinyDB
- TinyXML
- Tk
- Tkinter
- TM-align
- tMAE
- tmap
- tmux
- TN93
- TOBIAS
- ToFu
- Togl
- toil
- tokenizers
- Tombo
- TOML-Fortran
- TOPAS
- topaz
- TopHat
- torch-em
- torchaudio
- torchdata
- torchinfo
- TorchIO
- torchsampler
- torchtext
- torchvf
- torchvision
- tornado
- TotalView
- tox
- tqdm
- Tracer
- TranscriptClean
- TransDecoder
- Transformers
- Transrate
- travis
- TRAVIS-Analyzer
- treatSens
- TreeMix
- TreeShrink
- TRF
- Triangle
- Trilinos
- Trim_Galore
- trimAl
- trimesh
- Trimmomatic
- Trinity
- Trinotate
- Triplexator
- TRIQS
- TRIQS-cthyb
- TRIQS-dft_tools
- TRIQS-tprf
- Triton
- tRNAscan-SE
- TRUST
- TRUST4
- Trycycler
- tseriesEntropy
- tsne
- turbinesFoam
- TurboVNC
- TVB
- tvb-data
- TVB-deps
- tvb-framework
- tvb-library
- TWL-NINJA
- TXR
- typing-extensions
- u
- UCC
- UCC-CUDA
- UCLUST
- UCX
- UCX-CUDA
- ucx-py
- UCX-ROCm
- udocker
- UDUNITS
- UFL
- Ultralytics
- umap-learn
- UMI-tools
- umi4cPackage
- umis
- Umpire
- UNAFold
- uncertainties
- uncertainty-calibration
- Uni-Core
- unicore-uftp
- Unicycler
- Unidecode
- unifdef
- UniFrac
- unimap
- units
- unixODBC
- unrar
- UnZip
- UQTk
- USEARCH
- UShER
- USPEX
- utf8proc
- util-linux
- v
- V8
- vaeda
- Vala
- Valgrind
- Vamb
- Vampir
- Vampire
- VAMPIRE-ASM
- VarDict
- variant_tools
- VariantMetaCaller
- VarScan
- vartools
- VASP
- VAtools
- vawk
- VBZ-Compression
- VCF-kit
- vcflib
- vcfnp
- VCFtools
- vConTACT2
- VEGAS
- velocyto
- Velvet
- VEP
- verifyBamID
- VERSE
- VESTA
- ViennaRNA
- vigra
- Vim
- VirSorter
- VirSorter2
- virtualenv
- VirtualGL
- Virtuoso-opensource
- visdom
- Visit
- vispr
- VisPy
- vitessce-python
- vitessceR
- VMD
- VMTK
- voltools
- vorbis-tools
- Voro++
- vsc-base
- vsc-install
- vsc-mympirun
- vsc-mympirun-scoop
- vsc-processcontrol
- VSCode
- VSEARCH
- vt
- VTK
- VTune
- VV
- VXL
- w
- waLBerla
- wandb
- Wannier90
- WannierTools
- Wayland
- Waylandpp
- WCSLIB
- WCT
- wcwidth
- webin-cli
- WebKitGTK+
- weblogo
- WebSocket++
- WEKA
- WFA2
- wfdb
- WGDgc
- wget
- wgsim
- WHAM
- WhatsHap
- wheel
- WIEN2k
- WildMagic
- Winnowmap
- WisecondorX
- WISExome
- wkhtmltopdf
- worker
- wpebackend-fdo
- WPS
- wradlib
- wrapt
- WRF
- WRF-Fire
- wrf-python
- WSClean
- wtdbg2
- wxPropertyGrid
- wxPython
- wxWidgets
- x
- X11
- x13as
- x264
- x265
- XALT
- xarray
- XBeach
- xbitmaps
- xcb-proto
- xcb-util
- xcb-util-image
- xcb-util-keysyms
- xcb-util-renderutil
- xcb-util-wm
- xCell
- XCFun
- xclip
- XCrySDen
- xdotool
- Xerces-C++
- xESMF
- xextproto
- xf86vidmodeproto
- XGBoost
- XGrafix
- xineramaproto
- XKeyboardConfig
- XlsxWriter
- XMDS2
- Xmipp
- xmitgcm
- XML-Compile
- XML-LibXML
- XML-Parser
- xmlf90
- XMLSec
- XMLStarlet
- xonsh
- XOOPIC
- xorg-macros
- xpdf
- XPLOR-NIH
- xprop
- xproto
- XSD
- XTandem
- xtb
- xtb-IFF
- xtensor
- xtrans
- Xvfb
- xxd
- xxHash
- XZ
- y
- z
(quick links: 0 - a - b - c - d - e - f - g - h - i - j - k - l - m - n - o - p - q - r - s - t - u - v - w - x - y - z)