Octopus-vcf

Octopus is a mapping-based variant caller that implements several calling models within a unified haplotype-aware framework. Octopus takes inspiration from particle filtering by constructing a tree of haplotypes and dynamically pruning and extending the tree based on haplotype posterior probabilities in a sequential manner. This allows octopus to implicitly consider all possible haplotypes at a given loci in reasonable time.

homepage: https://github.com/luntergroup/octopus

version	toolchain
0.7.1	foss/2020b
0.7.2	foss/2020b

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