pyseer

pyseer was first written a python reimplementation of seer, which was written in C++. pyseer uses linear models with fixed or mixed effects to estimate the effect of genetic variation in a bacterial population on a phenotype of interest, while accounting for potentially very strong confounding population structure. This allows for genome-wide association studies (GWAS) to be performed in clonal organisms such as bacteria and viruses.

homepage: https://github.com/mgalardini/pyseer

version	toolchain
1.3.11	foss/2022b
1.3.12	foss/2023a

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