RSeQC¶
RSeQC provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data. Some basic modules quickly inspect sequence quality, nucleotide composition bias, PCR bias and GC bias, while RNA-seq specific modules evaluate sequencing saturation, mapped reads distribution, coverage uniformity, strand specificity, transcript level RNA integrity etc.
homepage: http://rseqc.sourceforge.net/
| version | versionsuffix | toolchain |
|---|---|---|
2.6.4 |
-Python-2.7.12-R-3.3.1 |
foss/2016b |
2.6.4 |
-Python-2.7.14 |
intel/2018a |
3.0.0 |
-Python-3.6.6 |
foss/2018b |
4.0.0 |
-Python-3.8.2 |
foss/2020a |
4.0.0 |
foss/2021a |
|
4.0.0 |
foss/2021b |
(quick links: (all) - 0 - a - b - c - d - e - f - g - h - i - j - k - l - m - n - o - p - q - r - s - t - u - v - w - x - y - z)