Reads2snp

reads2snp is a SNP and genotype caller: it predicts the genotype of distinct individuals at distinct positions of a set of sequences based on read mapping / read counts. Its typical input is a bam file. Its typical output is a vcf file. It is written in C++, based on the bio++ libraries, multi-threaded with openMP, available under Linux and MacOS

homepage: http://kimura.univ-montp2.fr/PopPhyl/index.php?section=tools

version	toolchain
2.0	system

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