seq2HLA¶
In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie index comprising all HLA alleles and outputs the most likely HLA class I and class II genotypes (in 4 digit resolution), a p-value for each call, and the expression of each class.
homepage: https://github.com/TRON-Bioinformatics/seq2HLA
| version | versionsuffix | toolchain |
|---|---|---|
2.3 |
-Python-2.7.15 |
foss/2018b |
2.3 |
-Python-2.7.14 |
intel/2018a |
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